RNA id: XM_036976061.1


Basic Information

Item Value
RNA id XM_036976061.1
length 5480
RNA type mRNA
GC content 0.48
exon number 40
gene id LOC110522448
representative False

Chromosome Information

Item Value
chromosome id NC_048568.1
NCBI id CM023222.3
chromosome length 46841314
location 28958084 ~ 29140138 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CCACTGGATGGCGAGTGGTACAAGAGGAGCGGGCTCTTGGAAGGGAAGGATAAAgacaagaggggaagagagagagatagtttgagaggaacagagagagggcgggagataCAGCACAGCAGCTGTAAAAAGGAGAAAAAATCCCGGCCCAGCCTCTGCAAGCATCATTTGTCACATCGGATTTTATCCGTTCTCGTCGCAACCAATTTACGCCAAGATATGAGTTTCACCCACTGAAGTTACTTCATGCTGAACTGaacGTGGTCCAGTGCCCTCCACTGTGCCGCCTCCTCCCAGTTCAGAGCCCTTCCGTCTGTCCGGTGTAAGCAGCCATGACTAAGTCCTATGAGTTTAACTGGCAGAAGCACCTGCCTGGCTTCATGCAGGAAGGAGCCTCATTCGACAGGTTTGACGAGGACCCGTTTCTGTTTGAGCCCAACTGTCTGGTAAAAGTGGACGACTTTGGCTTCTTCATCACATGGAAGAGCGACGGAAAGgAGGGCCAGGTTCTAGAATGTTCTTTGATCAACAGTATTCGAGTCGGAGCCGTTCCAAGGgacccTAAGATCCTGTCTTTGTTTGAGGCAGCggggaagaaggaggaggagctggagggatgTGTCATCTGCGTTTGCAGCGGCACCGACCTCGTCAACCTGTCCTTCATGTACATGGTGGCTGACAGCCCAGACACTGCTAGGaaGTGGACAGAGGGTTTGAGGTCAGTGATCCACAACTTCAGAGCCAATAACGTCTGTCCTATGACCTGCCTCAAGAAACATTGGATGAGGATGTGCTTTCTGACCAATGTGAACGGCAAGATCCCAGTGAGAACCATCACACGGACGTTTGCATCTGGGAAAACAGAGAAAGGAATCTTTCAGGCTCTGAAGGAACTGGGTCTGCCTAGTGGAAAGAGCGAGGAGATAGAAGACTCAGCCTTCCCCTTTGACATCTTCTACGCCCTGACTCAGAAGATCTGCCCTCGTACTGACATCCAGGAACTCTTCAACAGAATCAATGGGGACAAAAGTGATTTTTTAAACGTAGACCAGTTAGTCAGCTTTCTGAATGAAAATCAGCGCGACCCGCGGCTAAACGAGATCCTGTTCCCCTTCTACGACCCAAAACGAGCCATGCAGATCATCGAGAAGTACGAGAGAGACCCAGACCTCAAGAAGAAAGGCCGTATGTCCAGCGATGGCTTCTGCAGGTACCTGATGTCAGATGAGAATGCCCCGGTGTTCCTGGACTGTCTGGAGCTGTACCAGGACATGGAACAGCCGCTGGCTCACTACTTCATCGCCTCCTCCCACAACACCTACCTGACCGGGAGGCAGTTTGGAGGAaagtcctctgtggagatgtacAGACAGGTTCTGCTCTCCGGCTGCAGGTGTGTAGAACTAGACTGCTGGGATGGAAAAGGAGAAGACCAGGAGCCTATCATCACtcatggcaaggccatgtgtacTGACATCCTCTttaagGATGTGATCTCAGCCATCAGAGAAACAGCCTTTGTGACATCTGAGTATCCTGTGATCCTGTCATTTGAAAACCACTGCAGTAAACCCCAGCAGTACAAGATGGCTCGGTACTGTGAGGAGATCTTTGGAGACTACCTACTGAGGCATCCTCTCGAGGGATACACTgTTGAAGCGGGTCGTCCCTTGCCTTCTCCCATCGACCTCAAACGCAAAATCCTCATCAAAAACAAACGCTTGAAACCTGAGGTGGAACAGAAGCAGTTAGAGTCCTTTAAGAAGCACATGGAGGCTGGAGAGACCAACACACCAGCTATCTTACTGggagcagagacagaggaagatgtGGAGAatgCTCTAGGTGATGTGAAGGAGGTGAACCCTGACTTGAAGATCAGTACATCAGAGGAGCCTAGTGAAGACAACAGCCTCAGCACCAGTGTCAGTGtgaagaaagaaggagaggagagggacaacagCATCAAAAAGGTTGTGGAGGAGGATCCAACAGAGATGTCTGAGGCCACAGAAGTTACAGACACCACAGACATCTCAGAGGCTTCTGAGGATAACAACATCAAAAAGACTGGCGAGACGACGGATGACGAGGAGGCTCTGATAGCCTCGTACACATACGTAGGAGCCACCACCAACATCCACCCCTACCTCTCTGCCATGGTCAACTACGCACAGCCAGTCAAGTTCCAGAGCTTCGACGTCGCAGAAGaGAGGAACATCCACCACAACATGTCGTCATTTAATGAGTCAGTGGGTTTGGGTTATCTAAAGACCAACGCCATCGAGTTTGTCAACTACAACAAGCGTCAGATGAGTCGGATCTATCCTAAAGGAGGCAGGGTGGACTCCAGTAATTACATGCCTCAGATCTTCTGGAACGCAGGCTGCCAGATGGTCTCCCTTAACTACCAGACcccagATCTGGCCATGCAGTTGAACCAGGGAAAGTATGAGTACAACGGATCCTGTGGGTATCTGTTGAAGCCAGACTTCATGCGTCGCTCAGACAGGATGTTTGACCCCTTCTCAGAGACACCTGTGGACGGGGTTATTGCTGCTACCTGCAGTGTACAGGTGTTTTCTGGTCAGTTCCTGTCTGATAAGAAGATTGGGACCTACGTAGAGGTGGACATGTATGGGTTGCCCACGGATACCATCCGCAAAGAGTTCCGCACCCGCATGGTGATGAACAACGGCCTGAACCCCGCCTACAACGAAGAACCTTTCGTCTTCAGGAaggtgattctgccagacctggctGTGCTGCGTCTAGCTGTGTATGATGACAATAATAAGTTGATAGGTCAGAGGATTCTACCATTGGAGGGTCTACaggcaggatacagacacatCTCTTTACGCAACGAAGGGAACAAGCCTCTGTCTTTACCCACCGTTTTCTGTAACATAGTACTTAAGACCTACGTACCCGAAGGCTTTGGAGCCATCGTGGACGCCCTGTCAGACCCCAAGAAGTTCCTGTCCATAGCAGAGAAGAGAGCGGACCAGATGAGAGCTCTGGGGATTGAAACGagcGACATAGCAGATGTGCCAAATGAGAGTTCGAAGAACGACAAGAAAGGGAAGGTAAACGCCAACGTGAAGACCAACTTGACGCCACAGACCAGCTCAGACCCGACTCAGTCTTCTACTTCTGCCCAGAACAACACCACTGACACCAAGAAggATATAAATGCACTGGTGCCTCATGTGAATATTGATGACTTGAAACAGATGAAGACGTACCTTAAACTGATTAAAAAGCAGCAGAAAGAGCTGAACTTTTTAAAGAAGAAGCACGCAAAGGACCGCACCATCATGCAGAAGTGCCACTGCACCCAGGTGGACAAGATGATTTCTCAGCACGACAAGGAGAAGCTGACACAGGACAAATTGCTGGAGAAGGCCATCAAGAAACGAGGAGAAAACAACTGTCTGGAGCTGAAGAAGGAGACTGAGAGTAAAGTGGAGAAACTGAACACTGACCACAAAGCTAAGGTGAAGGACATTACAGCCCAGCACACTAAGGAGTGGTCAGAGATGATCAACTCCCACAGCAGTGTAGAGCAGGATATGAAGGACATCCACGTGGTCCAGCAGTGTGAACAGCTCAAGAAACTACTGAGTGGAGTCCAGGAACAACAGACTCTTTCGCTCAAATTGATTCACgaacgGCAGAGCAAGGAGATGCGGGCCAACCAGGCCAAGACCTCCATGGAGAACAGCAAGGCCATCAGCCAGGACAAGACCATCAAAAacaaggcagagagggagagGAGAGTTAGAGAGTTGAACAGCAGCAACACCAAAAAGTTCCTGGAAGAAAGGAAAAGGTTGGCTATGAAGCACCAGAAGGAGATGGAGACGCTGGAGAAGTCTCAGAAAGAACAGCTAGAGAAACTGGACAAGTTCAATGAGCAGCTTTTGAAATCACATCATGCCAGTAAACAGTGTCAAGGCCAAAGACATCCAGCAGATGGTGAagctggaggaggagatggaccGCAGACCAGCCACAGTGGTTTAACCACTCCCAccaactgagacacacacacatatacactgccCAGACCAGCCACAGTGGTTTAACCACTCCCAccaactgagacacacacacagacacacacacacacactctgcccagACCAGCCACAGTGGTCTGAACACCCCCACCAACAcctaagacacacacaaacacccacacaggcACCGAATGCTCCCTCAAACAACTGTCGCAGagacccagaaacactcacacacCCCACTACACACACCCCCTAGATCCCCCGTTTCATTTCCTCACCCTGCAATATTGTCATAACTCATATCCTCTATCCCTCTAAATCTCCCTCAGCAATgaaccacacccacacacagtcaGTCCCCCCTCCAACTCCCCTGTGCTGTGGAGCCATTGGTGCAGACCGGTGATTGACAGTAAGATGAGCGAATGCTGTTTGAACGTGGGTGGGACATCCAAAACATTGAGAGACACATCCCACCTTCACCGTTCCATTTCTCCACCACTCTACTACACCCGGATCCGCTTTTTATAATCCTCCATCCATCTTTTTAATCTGTTTTAAATGGAAGCAATGTTTGCAGATATCAATAGTCACTGTACACATACACAAAGACActgatacacatacacacaatctttATCACGTCTGTTCTTTCGGTTGTCATGACGGCTTAAATCATGTTTTCTGTTCAAACTCTTGTAAtagttttattttgtatttttaatggTACCAGGTATCAATAACAGGACCAGAATATGGAGGGGGAAAATACGGATGTATTAGTTATACATTTTATGTCAGCACAAAATATGTAAATGATGCTGTATGCTACACAAGAGTTGAAGTAATGTCCTGAGCACTTTATATGTGGTAGGCATAATGTGGTAGACATAATGTGGTAGGCTATCATAACCCAAGTGATAGATGTCTCTGTTTTGATATGAATGTAAACTGAAAAAGGACAAAACGTTGGATGAGCGCTGTTCGGAGAAAACTAAGCCCAACGTCAGGTAGTCCTAAACACTGCAGCTTGTCCTTCACACATAGTTTTGTTTTATCAAGGGATATCTACGAATTTTTCTCAactaaaaaaatatacaaaaggCTAAACCAGAGACTGATTTTAATTCTTTCACACCGACAGAAGTGTGTATAGGGAGTGTGGATGTGTAGACCAGTGTTCTTTCGCTGGCCTGTCTTGTATGACACCGTGTTAGATTCAGAAATAACcacttaatgtattgtatgtGTCAAATGGCATAAAGAGGACAatcatttttattaatttttttaaatttaacatTCATTTTGACATGGAGATATATAttaatatacatatacagtgcatttggaaagtattcaggcccccttccctttttccacattttgttacgttacagccttattctaaaatggatgaaataaaaaatgacaaagcaaaaaaacctta

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU384309 lncRNA upstream 18951 28936324 ~ 28939133 (+) True G339577
TU384310 lncRNA upstream 21906 28935188 ~ 28936178 (+) True G339578
TU384443 lncRNA upstream 40514 28916290 ~ 28917570 (+) True G339694
TU384440 lncRNA upstream 43021 28914599 ~ 28915063 (+) False G339693
TU384421 lncRNA upstream 77626 28880223 ~ 28880458 (+) True G339674
TU384507 lncRNA downstream 1869 29142007 ~ 29142351 (+) True G339721
TU384484 lncRNA downstream 2853 29142991 ~ 29146415 (+) False G339719
TU384476 lncRNA downstream 3258 29143396 ~ 29146843 (+) False G339719
TU384480 lncRNA downstream 3258 29143396 ~ 29146900 (+) False G339719
TU384479 lncRNA downstream 3643 29143781 ~ 29146415 (+) False G339719
XM_036976055.1 mRNA upstream 23331 28699067 ~ 28934753 (+) False LOC110521072
XM_036976056.1 mRNA upstream 23331 28699067 ~ 28934753 (+) False LOC110521072
XM_036976057.1 mRNA upstream 23331 28699067 ~ 28934753 (+) False LOC110521072
XM_036976059.1 mRNA upstream 23331 28699067 ~ 28934753 (+) True LOC110521072
XM_036976058.1 mRNA upstream 23647 28699067 ~ 28934437 (+) False LOC110521072
XM_021600845.2 mRNA downstream 13336 29153474 ~ 29163882 (+) False LOC110522450
XR_002473315.2 mRNA downstream 13336 29153474 ~ 29163882 (+) True LOC110522450
XR_005051514.1 mRNA downstream 35188 29175326 ~ 29176894 (+) False LOC118964462
XR_005051515.1 mRNA downstream 35188 29175326 ~ 29176894 (+) False LOC118964462
XR_005051513.1 mRNA downstream 42741 29182879 ~ 29186037 (+) True LOC118964461
TU384441 other upstream 42545 28914599 ~ 28915539 (+) True G339693
TU384407 other upstream 98929 28858716 ~ 28859155 (+) True G339660
TU381324 other upstream 1356528 27590852 ~ 27601556 (+) True LOC118964415
TU381040 other upstream 1773114 27176381 ~ 27184970 (+) True LOC110522355
TU380920 other upstream 2063247 26893135 ~ 26894837 (+) False G336464
TU384628 other downstream 26380 29166518 ~ 29166996 (+) True G339830
TU384729 other downstream 195231 29335369 ~ 29336939 (+) True G339928
TU387608 other downstream 2241688 31381826 ~ 31382749 (+) True G342538
TU387623 other downstream 2277817 31417955 ~ 31419256 (+) False LOC110522493
TU387645 other downstream 2310995 31451133 ~ 31451476 (+) True G342571

Expression Profile