RNA id: XR_002473315.2


Basic Information

Item Value
RNA id XR_002473315.2
length 2837
RNA type mRNA
GC content 0.45
exon number 7
gene id LOC110522450
representative True

Chromosome Information

Item Value
chromosome id NC_048568.1
NCBI id CM023222.3
chromosome length 46841314
location 29153474 ~ 29163882 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGTCTATGACAAAGGTGTGAGAGAGCGGACACTCGCACACACGCACTGCCCGGTGTTCTCAAGACTGAGTTCACACTGTGCGGGAGAGCACGTCGCCAATTTGCCAtccacgcgcacacacaccacatcaaCTGCAACCTGcccagaaggagagaagaggtggtAGCACACACCTCAGCTGCAATCACAGAGATGGAAACAGCAGCATTGCGGTACTGACTAGCTGTGGTTGCTTTTTGAAGGAAACTAACTTCGGGAGAGAAACTTAACTTCTTCCCCACAGCGAATCGCCTGAGTCACGCAGAGCGTCGTTTCCGGCTCCCTGTCTGTCTTAGTATGTGCAGGGGAAACTCTGCTTCGCCGCCGGTGACGCTCACCAAAAACTCTCTCATCGTCTGAATTTAGAGAGGATAGAGTCTTAATTAAGCTGTACAATGCGTTCAGATAGCAGTTAACGAAACAGCCGTGACATTTTAATACGCAGCAAACCAGATGCGAACTCTCACATTCACCTGGAGATTTGCTGCATTCGCGATGATCGTGACTACGAGACACTGAGCagctgtatccctcctctctctcttgtctttttctctctctcgctctctctttgcgGGTTCACTACAAGGCTACCAGCCATTTAGCCATTTCGGCAGTGCAATGGAGCAGCTCAGATTCAGCACCTTGGACACCGCTGGAGTTCTACTGTGTTTGTTcgCGATCCTGGTCCGGTTTACGGTCACCGCCGAGCAGGAGGGAGAGAACCTCTCTGGTCTGTCCACCAACCCGGATAAAGACATATTCGTGGTCCGAGAGAACGGGACCACCTGCCTCATGGTCGAGTTCGCTGTCCGCTTCACGGTCCCCTTCGATGTCCTCGCACTCAACGGAATAGATCTTATCACGGAGAATGCGTATCTGGCTCTGCCTCGCGGGGCAGACATAGAGGGGAAATGCGGGAGCCAGGACGCCCATATACACATCTCGTGGAATGATAACGCCTACACACTCCGCATCTACTTCGTCAAGgaaaTCAGTGGCAAGGGACATGTGTGGAAAATTAGCAAGGTGCAGTTTGTTTATGACACCTCGGAGAAAACGCATTTCCTCAACCCATACAACCCTGGGAAGCACACAGCCAGCACCCACCATTTGTCAGCGTTAGAGACCCCTGCTGGCCGCTCATATGTCTGCGAGGCTAAGCAGACACTCACCCTCATCTCCAGTGACCACCAGAAGGGAGTGACTGTTGCCATAAGTGACGTCCAGATCCAGCCCTTCGACATCAACTCAGATTTCATGTTCAGTGAAGCCTATAAGTGCATCACGGACCAGAGGGAACAGCTGGAGGAGACTCTTCCTCTGATCCTGGGCTTCATCCTGGGCCTCATCATTGTCATCACACTGTCCGTCTACCACTTCCACCTTAAACTGACCGCTGCAGCTCAGTCTCAGCTGCCTTGCGACCGATCCATGTACAACAACATGTAAGGAACTGGACATTTAAACAGCCACTGTACCACAAATCTCCCTGGTCAAGAGGAATATGTAAGAAATCAGATATTATCATCACAATAATACAACTCCATGTTCAAGGTAATAGGACATTGAAACAAGCACAACATGATGTTCAAGGTAATAGGACATTGAAACAAGCACAACGTGATGTTCAAGGTAATAGGACATTGAAACAAGCACAACGTGATGTTCAAGGTAATAGGATATTGAAACAAGCACAACGTGATGTTCAAGGTAATAGGACATTGAAACAAGCACAACGTGATGTTCAAGGTAATAGGACATTGAAACAAGCACAACGTGATGTTCAAGGTAATAGGATATTGAAACAAGCACAACGTGATGTTCAAGGTAATAGGACATTGAAACAAGCACAACGTGATGTTCAAGGTAATAGGATATTGAAACAAGCACAACGTGATGTTCAAGGTAATAGGATATTGAAACAAGCACAACGTGATGTTCAAGGTAATAGGACATTGAAACAAGCACAATGTGATGTTCAAGACATTACAACCACTATACTATAAAATCAAGACATCATGACCACTCTCCATTCAAGGATTGGACATTAGAACAACAATCATTGACTACAATTATAACCGCAACGCTCCTGCCTCTCCAAAGTCAAACCAACGTGACTTCCCCTGCTCTGAACTTCACCATATATTGGAGAGTAGGCCAGAACTTGATGGAGGCCTAACTTGCAATATGGCTAACGTGAGATATGCTTTTGAGTAAAACCATGCATTGAAGTCAATTGGAGACTTGCGCAACATTTGATTTACGCACAGAGATTTTTCAGTTAGCATTCCACCCATAGATGGTGTTCTGTTGTTTGTGTCCATAAATCGTAGTTATGTGGAGAAGCCTGCAGTTTGTCATTCCccatcccctgtctctctctgtctttcctgtGAACACGCTGCAAAACAAGTTGTGAAAGTGGAGAGTGTTGTGCTTTGTGCAGGTGTTTCAACGACCTTCAGAAatcatgaaaaataaataattgcaGGCAGTGTATTTACTTTGGTTTGATGGATCCTTTTCCAGATCCCATTTTATGGAATTATATAaagaaaaaatatgaaatatgtaaataaaacaaagaaaacatgtTCTGTAAATAACTTGCAAAGAAATGATGTAATAATTTATCTTCAATCAGAATGTCAGAAGAACAAAGTGTATCATTGTGAAAGAAATGTGCGATATTTAAGCTTCAAAAAtaataaatgtaaaatattttCAGAAGAACTATGCTGATGCAAACTTTAATGTTCACTGAAATAAATTTCCTAGGAGATGTCCTAAACCTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU384480 lncRNA upstream 6574 29143396 ~ 29146900 (+) False G339719
TU384476 lncRNA upstream 6631 29143396 ~ 29146843 (+) False G339719
TU384477 lncRNA upstream 6631 29145438 ~ 29146843 (+) True G339719
TU384484 lncRNA upstream 7059 29142991 ~ 29146415 (+) False G339719
TU384479 lncRNA upstream 7059 29143781 ~ 29146415 (+) False G339719
TU384635 lncRNA downstream 11081 29174963 ~ 29175836 (+) True LOC118964462
TU384640 lncRNA downstream 31929 29195811 ~ 29196058 (+) True G339841
TU384643 lncRNA downstream 36441 29200323 ~ 29201127 (+) True G339844
TU384647 lncRNA downstream 44495 29208377 ~ 29208841 (+) True G339848
TU384648 lncRNA downstream 45115 29208997 ~ 29209272 (+) True G339849
XM_036976061.1 mRNA upstream 13336 28958084 ~ 29140138 (+) False LOC110522448
XM_036976062.1 mRNA upstream 13336 28958084 ~ 29140138 (+) False LOC110522448
XM_036976063.1 mRNA upstream 13336 29087241 ~ 29140138 (+) True LOC110522448
XM_036976057.1 mRNA upstream 218721 28699067 ~ 28934753 (+) False LOC110521072
XR_005051514.1 mRNA downstream 11444 29175326 ~ 29176894 (+) False LOC118964462
XR_005051515.1 mRNA downstream 11444 29175326 ~ 29176894 (+) False LOC118964462
XR_005051513.1 mRNA downstream 18997 29182879 ~ 29186037 (+) True LOC118964461
XM_021600852.2 mRNA downstream 175654 29339536 ~ 29348164 (+) True LOC110522451
XM_021600854.2 mRNA downstream 258412 29422294 ~ 29461382 (+) False LOC110522452
TU384441 other upstream 237935 28914599 ~ 28915539 (+) True G339693
TU384407 other upstream 294319 28858716 ~ 28859155 (+) True G339660
TU381324 other upstream 1551918 27590852 ~ 27601556 (+) True LOC118964415
TU381040 other upstream 1968504 27176381 ~ 27184970 (+) True LOC110522355
TU380927 other upstream 2258637 26893135 ~ 26894837 (+) True G336464
TU384628 other downstream 2636 29166518 ~ 29166996 (+) True G339830
TU384729 other downstream 171487 29335369 ~ 29336939 (+) True G339928
TU387608 other downstream 2217944 31381826 ~ 31382749 (+) True G342538
TU387623 other downstream 2254073 31417955 ~ 31419256 (+) False LOC110522493
TU387645 other downstream 2287251 31451133 ~ 31451476 (+) True G342571

Expression Profile