RNA id: XR_005051513.1


Basic Information

Item Value
RNA id XR_005051513.1
length 1935
RNA type mRNA
GC content 0.42
exon number 3
gene id LOC118964461
representative True

Chromosome Information

Item Value
chromosome id NC_048568.1
NCBI id CM023222.3
chromosome length 46841314
location 29182879 ~ 29186037 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GACTTACGCCTAAAAATGTGTGATCGTGAAGGGCTACGTAAAGGACAGGGCGCCGTTTGCTTCTGAGAATCTACGTCTAACAGTCGCTTCCCAATCACTTATGTCCAGTAGCCTTCAGAAATATCCATTAGGAGGGCTTTACAGACTATGCTATCTGTCCTGGCAGTTAAATATTCGGGCCTTTGGGTTTGCGCTAAAGCCGTGCTAAACGTGTTAAAAATAGACGTTCTGTCCCTAACTTGTTAAAGTACGGAATGAGTTTCGAGAGATAGCCTGTATGCAACCAACTAACTGTATGTTTGCTTTAGACCAAAAGGCTGTGAATTCAAAGAGCCGTTCTGTCATGCGTTTTGTTTGGGGGGTCCTGGGGGGCGTTGATTAGATATCCAGGTTTAACCCCGGGCGGTCGGCCGATACCTTGACATGTCATATGCTGGATAGTTCAAACTTTGAATTTCAAACGATTCTCTACAGATGGGACCCCATGTTGAACCCACACAAACAAACCCTTTGTTTtttgaaacgcacacacacacactcctgctgctcCGTCACACGCACACTCATGCACGCACCCTGATTTTCAATGTCTTTTTCTTCGCGACAGAGTTGGCTGAAGATGTGAAATACCGTTTCACATAGTTACGGACCGGGTTGATGGCTGGAAAGGACATTTTCCCTTCGTTAAAGGATAGATGGTCCGGTTAGCCACGACCATTATCCATTTCAAATTCATCAACTCAAAGACGCTTGTCCGCTCCATCAAAACTCCGTAAGTTTTCCCTCCATGTGTAGATCAACCGTTCCTGCCTGTAAATCCTGGGTATGCCCACATCATTAATGAATAAGATGTGTAGAAAACTGTTTAGCCATAGTTAAAGGCCTTTCATAAAGAGTCTGTCATGATTGCCTGTGCCACACTTATTGCTTGTTACCTAATAATACTGTTGTACATTTAATATCCACTAGCAGATTTCGTCGCATTTGCACAAATTCGGTCATGTTACTGTGGTCTTTTTAAATGTCAGTAAATATGTGTGTAAAGTGTATATGTTTGTTTCACTGTAGATTTGTTTAAGCCCTCCTAGAAACACCTAATTAAAGGCCTTTTCATAAAGAGGCTGTCATGATTGCCTGTGCCACATGTTTAACACGTATTGCTTATTACAGAATACTACTGTTGTACATTTAATATCCCCTAGCAGATTTCGTTGCATTTGCACAAATTCTGTCATGTTACTGTGGTATTTTTAAAAGTCAATAAATATGTGTGTAAAGTGTACATGTTTGTTTCACTGTAGATTTGTTTAAGCCCTCCTAGAAACACCTCATTTCATCCCACAGCCTTAATTAATAAGCTGTGCAGAAGCTGTTTAGCCATAAGTAAAGGCCTTTCATAAAGTGGCTGTCATGATAAACCTGAAATTACCTTTAGGATCTTTTCTTTGGGGTTCTAATCTCCCCAGGTGTACATGCACTGAAAATCCTTAGGCTGGAGCCATCTTGAAGCTCTGTGCCTGTACATATAAAGAGAACTAAATAGGAAACTAGGCTGAGAAACATTATTTAGATGGCTGTTTAATTgttgtttaaagcctgaaatggaCACAATGCCAAGGGACcttgtttctaacacacacacacacatacagacacacattccTGCTCCATAGATAACAAACATAAGGGCAATAAAACTGGGGGGGTCATACCCGGTCCAAAAGTTCaaacacaacaaccacagttcAACCAGGCCCCTAGACATCCATCAACTGGACTACTTCAAAGGATGACATAGAGAtctgaaataacacaaaataacacgTGACCACGGGAACAGGGGGGACGGGGAGGGGGCACATATTCGGACACGCAAAGGTCAAAATGACGTAAGGTCATCAATCAATCATTTTGACGCGtgccgtctactttatt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU384635 lncRNA upstream 7043 29174963 ~ 29175836 (+) True LOC118964462
TU384480 lncRNA upstream 35979 29143396 ~ 29146900 (+) False G339719
TU384476 lncRNA upstream 36036 29143396 ~ 29146843 (+) False G339719
TU384477 lncRNA upstream 36036 29145438 ~ 29146843 (+) True G339719
TU384484 lncRNA upstream 36464 29142991 ~ 29146415 (+) False G339719
TU384640 lncRNA downstream 9774 29195811 ~ 29196058 (+) True G339841
TU384643 lncRNA downstream 14286 29200323 ~ 29201127 (+) True G339844
TU384647 lncRNA downstream 22340 29208377 ~ 29208841 (+) True G339848
TU384648 lncRNA downstream 22960 29208997 ~ 29209272 (+) True G339849
TU384653 lncRNA downstream 30694 29216731 ~ 29217221 (+) True G339854
XR_005051514.1 mRNA upstream 5985 29175326 ~ 29176894 (+) False LOC118964462
XR_005051515.1 mRNA upstream 5985 29175326 ~ 29176894 (+) False LOC118964462
XM_021600845.2 mRNA upstream 18997 29153474 ~ 29163882 (+) False LOC110522450
XR_002473315.2 mRNA upstream 18997 29153474 ~ 29163882 (+) True LOC110522450
XM_036976061.1 mRNA upstream 42741 28958084 ~ 29140138 (+) False LOC110522448
XM_021600852.2 mRNA downstream 153499 29339536 ~ 29348164 (+) True LOC110522451
XM_021600854.2 mRNA downstream 236257 29422294 ~ 29461382 (+) False LOC110522452
XM_036976070.1 mRNA downstream 236257 29422294 ~ 29461382 (+) False LOC110522452
XM_021600855.2 mRNA downstream 247308 29433345 ~ 29461382 (+) False LOC110522452
XM_021600858.2 mRNA downstream 277918 29463955 ~ 29478206 (+) False LOC110522453
TU384628 other upstream 15883 29166518 ~ 29166996 (+) True G339830
TU384441 other upstream 267340 28914599 ~ 28915539 (+) True G339693
TU384407 other upstream 323724 28858716 ~ 28859155 (+) True G339660
TU381324 other upstream 1581323 27590852 ~ 27601556 (+) True LOC118964415
TU381040 other upstream 1997909 27176381 ~ 27184970 (+) True LOC110522355
TU384729 other downstream 149332 29335369 ~ 29336939 (+) True G339928
TU387608 other downstream 2195789 31381826 ~ 31382749 (+) True G342538
TU387623 other downstream 2231918 31417955 ~ 31419256 (+) False LOC110522493
TU387645 other downstream 2265096 31451133 ~ 31451476 (+) True G342571
TU387844 other downstream 2599828 31785865 ~ 31786206 (+) True G342707

Expression Profile