RNA id: XM_021600855.2


Basic Information

Item Value
RNA id XM_021600855.2
length 8709
RNA type mRNA
GC content 0.46
exon number 7
gene id LOC110522452
representative False

Chromosome Information

Item Value
chromosome id NC_048568.1
NCBI id CM023222.3
chromosome length 46841314
location 29422294 ~ 29461382 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTGCAATTAACCGAGTTGAATCAAGTTAATCCGAGCCACTTCGCAGGGGGACGCATATTCGACAAATATTTTGGGTTTTAGTCTTGAAATTAACCGCCAGGCCTTTTCGCTATTGGAAGACTGGGATGTCAGCGAGGCTTGTCTGTATAGCAATTGGTTAAAATGAAGTTTTCTGCAAATCCGTGAAGCCGAACCAGGAAGAGCAAAGCACATCGCGCAGGCAGCcaccgtcctctctctctccactccccagCTCTCCCCCAGTCAGTACAGAGATCAGTTCAGCCATCACACCAGTCCAGCACTATTTCGACGCTTCTCCAGGCATAGTATGACGGAGTCGTCGGAGTGTGCCTAGTGGTGCAGCATGTGATGACCCACGCCCAGAACAAAGGTTCTCTTAGCCAGAGTCGTAGCACAGTGACGCAGGAACACTGCCCCGATAGGCCACATGGTGAGACCATGGGCGGTGCCTGGCCTGAGCGCACGCTGCGATTCGGCAGGACCATGAAGAAGGGCAGAACTAAGCGAGGAAGGGGCGGTGTTAAAGAGATgatggacaggagggagaagacTCCGGAGCGGAATAGGAGGCGGAGCAGGAAATCTTATCCCTTACGAGGAAGGGGAGGTGCTCCGGAGGAGGAGGGACTTAGCTGTCACGTTTTGCTCACCCGACTGGAGAAGGACATCCAGGAGCAGGAGGACACCAGTGAGAGGGGGAATGATTCGCCAACTCAACCGTCCGTCAAACCTGAATCCCGGAGCAAGAAACTGGACAAAGGAAAAGACAAAGCCACGGGGAAAGTCCTGGCAAAGAAGATGATACCAAAAACTAAATCAAAAAGCACCAGTGATGAGCAGCGGTCGCCATTTCCAGAGCCGCGTAAGCGACGGCTAGCTTCTCTCAACGCTGAGGCCGTGAACAGTCTGCTGTTGGAGAGACCTAATGAGACCCAGCCGGCTTCTAAACAGGCCAGGAGACAGCAGGATGAGCCTACCAGCGGTGAGTCGTTCCTGGGGACAGATGCAGCCAGGCGCGGGGTGACCGGAGGTCCTAATGCTCCAAGAGCCAGCAGCAAGGCCTCCGCATCGCACAAGCCTGACCCGTGCCAAAGCTCCAGGAAGACTAAGAAGGTTTCCAAGAAACCGGCCAAACCAGACAGAGGACAGAAGAAAGAGATGATGACTTTACAAATGTTACACACCCCTGCTCCCCGACGGCTAGCTGGACTCAACGCTGCCGCGCTGCTAAAGTTAACGAGCACCTCGGCGACTAGCAAACAGCGAGTGAAAACGACATCAACGACTACGACGATGGACTGCAAGGCTACGAGCACCGCATCAGTTGACGTGAAGCAGAAGCAACCGCAACGGCGACCGAATCTTAAAACGTGCAGCCGCCAGCCTAAGCAGAAGGGAAGGCAGTTGATTCCAGAAGAGGTAGGCTGTTCTGCCTGCAAGAAGTCCAACTTCAAGAAGCCCAAAGTGGAGTGGGAGTCTGGCGGTTGCACCCACCGGCTAACCAAACCAGGCTACCAGTCGCGCAGCATGCTAGCCTACCCGTTGAAGCCCGTTGTCAAAGAGGAGCAGGTGGAGGCAGAGCTGAGCCCATACTACTGCTGTCCCCCGGAGGGCTCTGTGGAGTACTGCCATCGCCTGGCCTTGTTCCTGGGTCAGCAGGCCTACGCCGACTCTGAAGAACGACCTTTAAACTCTGCCCTAACCTCTGTGAAACGGGAGTGCCTAGTGACATCACCCTCCCATCCCCACTCCCACGCAGCCCTGACCCTCAGCCCCCACCCCTGCCTCTGCACCGCCGACCCCGCCTGCTTCTCCAGCTACTACGTCCACATCGCCCATCCTACACACCCTGGAGCTCCATCAGCCAACCTCAGCTCGCGACCTCTGAACTTTGGCCCCTCGACACTGTGTCCCGGCAGGGTGTCTGGCTCCAAGCTGCTGGGTCCTCCGGTGTCCCATTCCTCGACGCTGGCCCATCCTGCCTTCTGTGGCTCAGTGGGCACTCCCTGCTACAGCGAGGCCTGTCGGGTCAGCGGCTACACATACAGAGCCATGCAGCCGGTCAACAGCAGGGGTTGCTCTTTCTCCACAGGCTGCTCCGGGTGTACACACAGCATCAAGACAGaGGGTTACTCCTCCCCCCAGGGTGACCACAACCCCTCCCTTCTGgtttctccctcactccccctctcagGCTGTCCCCTCCCTACCACCCCGTCCTCCACCCAGGCCAAGCCCCGTCTCCTCACCCCCCTGTCTGACCGCAGTGTGCCCCAGGCCAGGCTGAAGCTGGCCAGGGAGTGCCCTCAGGGCTCCAAGCCCCCTAACGGCTCTCTGTCCATGGGGAGAACCAGGCTGTCCCAGAAACAGCCAGTTCCGACACACAACCTATCTCCCGCCAAGCAGAAGCGGGTCAGCCACCGACGGGCCACCAACGGGTGGCTGCCTGTAGGGGTGCCCACAGAGAAAGAAGTGTTCATTGCGGGGGAGGACGAGACGGCCTTACGGCAGTGTTATGAAGGAGTACAGAGAGACGGCGAAGTGATACGTGTCCGAGACACAGTGCTGCTGCGCGCCGGTCCCCGGAAGAAGTCCCTGCCCTACGTCGCCAAGATATCAGCGCTATGGGAGGACCCCAAATCTGGAGAGCTGATGATGAGCCTGTTCTGGTACTATCGACCTGAACACACACAGGGAGTCCGAGACCCCAGCATGCACTGTGAGAATGAGATTTTTGCATCTCGGCATCAAGACGAGAACAGTGTGGCCTGCATCGAAGACCGATGCTATGTTCTCCCATTAGCGCAGTACTGTCGATTTTGTGCCTTGGTGAAGCGGCGTGCAGAGGGTGTGCCCCCTGGCGCTGCCAGAGTGGTCCCCTGCCCCTCAGACTTCGACCCCCCCGACCACCGCCAGGTGCCCGCCGACATAGACCCTGAACTGGTGTACCTCTGCCGCCACGTCTACGACTTCCGCTACGGACGCATCCTGAAGAACCTGCAGTAGGGGACAGCagaggacaggcagacagaccaacCGTAGTGGAGCACACGCACTCCTTCACATGGGGCTGAAGGATGAGAGGGGGAACCCCTGAAGGGTTTTGGGGGTCCCCTGAACTAGAGGGAGGGCTGCTGAAGGATCAAGTATTGGAAGGGGACCACTGATATCTGAATCCCCAGAATGGCGTTGAAGGAGTGGGTACTGAAGTACCTTACCCCCTTTTACAACTGTTACTAGGGAGGTGAAGTTTTGACCCCCTCAACTGGAACTAGAACTGTACTGGCTTGGACAGAAGGGAGAGATCTGCTAGCTGTCCTGCTATACCAGGGCTCATCACCATGTGCATGGACAGCCATGTTGGTGACCTAACAAGAGGAAGAACTGCGCTACCAGAGCCATACAGGGCTCGTCATGACGTTGATGTTAGAGCTTGATGTGATGACAACGTTCTTCTTCATTTGTGTTTGTCTCTGAGGCAGCTGTGATCGAGAGGGCACTTGCagcttgaacacacacacaatgaggttttatgtcccgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgttcagtctgttgGCTACAGTGAAACCACAGGTGCAGGTTCACAAAGGAAGTGGAAGTCTCACCTTCCCTTCCTGCATTGTCcgaacagaacacaacacactATTCTGAAGTACCCTCAGCGCTGGCTGAGTCTCTAATCATACCCTATTCCCCATAAAGTGCATTACTTAGCAGATAAATGTTACTGTATAGCAGGGTTCCCCAATAGGCAgcccccccaagttttctgaacaaaattattttatttatttttaaatacggATTGTTGTGGGACATAAACTGTAAAATCAGCTcgaagtgattttaatttaggaaatctgtccTCAAGTATTCCCACTCATAAATGGAAATGATCATATCCCAGTGTAATCAAGGTCTGAAAttttgtttttgtcaaatactTTATCTGTTTGGGAtacttgtggtcaatttgcagggtACAAATAATTTATAACCGTCTACTGGctccccgaccatccgctcaagaagaaATTGTCCCCGGCTGAATGTAATTGGGAACCCCTGCTATATCGGGCTTTGGTCAAAGACAGGGCACTATATGAAGAATAGGGTCATGTGAGATGAAATCCCCCCCTGACCCCCTTTTTCTGTTCCTAAGAACAGGACTGTCGTCATGCTTTTGTCCAACGGTCCAATGGAGAGCCCCCTTACTGTGGAGGGCTAACCTCTCCCATGCTCTGCATTGGCCTATCAGATGGAGGGTTGTTGATGTCAGTGCCCACATCTTTGGAGTGTTCAGAAGTCTGAAACATTCCAGAACGTTCAAATGGAAATGTAACGTATTGCAGAGACCATTGCTTACTATACATGTCTATCTTAACTTTCTGTAATGTTGCACTCTCCTGAACGCGACCCTGTTGTTCCCATGACTTGCCTTATGACTTGCAGGTAGAGCTTTAGGCAGCTAGTCCCACCCAATTAGAAATTGGATGAGTAGAATGGAAAAAGTACAAAACCACAGACAAAATCCACATAGATTTCACTCCGGTCAACACTTTGCCATTGTTGTTTGAGTATAACACTGAGAAAGGTTTGGTTTCCTCAGAGATTCCCGAGTGATAAGCATTTTATTCAACATTACAACATGGTACATCCAATATGGCTGCTGGTCCACATGTTGTGGATCTTTGTCCATTCTACTCATTCTACTTCTATCCCCCCATCCCTTTCCATCCTTCGAAGCTCCGCCCTCTCCAAGATAAACCAAAGGATGTCACGAAGCAGAGCAccaccactcctctccttctcttgtcctcttcccgcctctcgtctcctccctcccttgttAGATTGCACTAATCCATTACTGAATTACAACGTCTATGATTGTGTTCTGATTTATGTTAAGCTACTAATATGTTATATTATAACTGGGGACAATACTGTGTATTATCACTGTCTGTGCGCTTAGTAGAGAATGGAAACTAAGGCTGTGTCATGGCAACTTTTATCAATGCATAACTACTTTATGTGTTTTACTATTAGAGACATCCGCCAGCATACTATCTATGTGTTACTTCAGGGGTGGATGACCTTACTCCTAGTGAGCTGCCAGGGTATGCAGGCTTTCGCTCCAGCCCTGCTCTAACAACTGATTAGTAAAAGCAGGTGTGTTAGTTGGAGCAGGGCTAGAGCAAAAACCTGCATATTCAGTAGATCTCCAGGAGGAGTGTTGGTCACCTCTGGTTTATATGTTACCTGCTATCCAACCAACCTGTCATATCATCTAATGAAATAATATGTAcaatgaaaaatcattcctgTAGATTGTGGATCCACACTGGTATTATTGTTGTTCATCCACGCTGTCCAGGGGGTTCAGGTGAGTTGGCATCTTGGTGTAACTCGCTGTGCGGAATGACGTAATGTGATGTTCCGGAGGTTTGGCTTGGAATCTCTGAAAAATGTCCTTTTGACACGCGTTATTGAGATGTGTTGGTTTTTAACCACAATCATTCAACATTGCCTTGTAACCTTCCGCAGAAGTGTCTGTCCGTCACGTGTAGTCCTAGACAAGCgccagtgtctgtctgactgagttAGTACTTCTTAAAACACTACCTTGGATTGCTTTCTTACTGTGCAAATGTTCTATTGCTGGACTTTGTGCCTAATCTGCAAAGTTTTGAATAATACCCAAAAGCCATCTGAAACATTTTCCATTATAACAGTTTGAATCATACCCCAAAATAGCGACTAAACAAAGCTTGTATCGGATAAATCATATAAAGGTTTAAATTTAAATATTATCAATAGGTATTTTGTTGCTAGTGGTGCCCAGATTCtttgaaaaaaataatatatattctCCTACTTTACAATTTTTCCTTATCGAAAATATTTTATTATGTCAATTTCTTAAGATGGCATATGCAATATATTTTTCAGAGGGACTATTTTTGACAAATGTATGTGTAAATCGAGGAAGTAAaactttttcattttattttagcTTAGTTTTGAATTTGAATCACAAGTCATAAATTGAGATTTGACCAAAAACCTGGAAGACGAGAAATGGGAAGGGTTAGGTTAATTTCTGACTATAAGGGTTGGTGCAAGATCTGAGGTCCCTACCTAAAACATGGTGGTTACACTTTATTTTACAGTCCAGTATTCACttgggcccagattcacaaaacacttcaTAAGATTGTCATAAGTACAATTCCTCAACAATATCTTAAGATTGAATGATTTTCTTACAAACTTCTCAAATATCTTCTTACAAATCATCTTAAAATGTTTGTTGCAAGGCAACCGTTTTAACTAGCTATCTAGCTTGAATGCCAATGATGTTAGCATATTTCTTCCTGAGATTACTGTTCTAAAACATGTTTTGGGCTTTTAAAATAATACGTTTGTgtgaattaaacatgttcaattgctTTCATGAGCTTTTTCTCTCACTGCCCTGAGTTTAAGACGAGGGTTTAGCTATCTTGGAATTTAACATTTCCAGGAACTTTATTTAAGAATCTAATTTCTTAACTTTTTACTTaagaattttttttttctcccaataacctttttgaggaatagcaactttgcttaACTTTCTTCTTAAGTATATAGTTAAGGAAAAcatgtcagttaagaagaaatgtcTTCTTAAGACGGTTTTGTGAATCTGAGCCCTGGTATTTACTTTGAATTTGCATGGTTAAATGGCAGTTAGTTACCTAATATTTACTTAGTAATTACATTTTAGTTTCTTAAGGATTCATTGGAAAAAGTATAACTTGGTACCAAGTAGTTACCAACCTGAGTTGAATTGTTTGAAATAATGACCAGAAGACagaaggtgccatttgagacgtgaCCTACTCTGTACTCTGCTGTGGTGTTACCACTTAATATCGTTCTGAATACTATATAAATACCAGCTAAAAGAGGACTGTAAATAGAGTTTTATGAAATTATTAAGTGTACATATTTGAACCCTGACTCTGTGACCCCTGACCCTCTGTAGACAGCAATTGCACAGTGCAGTAGTAGTATTTTTTTGCAAGACCTGTAGCTGATGATTATATTTaaaaatgaatacataaataTTTAAATGGAGTAAACCAATACAATATATAAAGATTTCAATTTAACTTATTTGGATAATGTGTTTTAATTGAAAAAAGTCCTCTTGCTAAGACTTTCGTGGTCAATAATGAAAAACAATTGGTTTCTTGTTATTAGTAATTTCTGAGTTTGGATATTAAATGATTGAATGGAGATTCACAGAGGTTGTAGTAGTTTGTACTTATATAGCTAGCGGTGTAGAAGGTTGTTTCTGTAACAGGGCTATATTCCTGCCCAGCCAGACAATGGCCAGGCCCGGTTGGCTGCAGCAGAAACAGACCGGCACCAGAGCTGGTTTCTATCTAGAGGTGCCACTTGGCATCAGGGGTAAAGAAGACCAAAGCACATTCTGACACAAAGTTAGGGGAGGTAGAcgttacactctaaccactgatCCAGGATCAGATATGTCCTCATCCCCCTGTTTGTTAAGGTTAGAATTGTGGTTTGAGGGTGAAtctaagctgatcctagatctgtggtttaGGGAGTGAAGTGTCTACATGTCTGACCTTAGGGTTTGATGTCTGGGAGGTTGCCATGGTAATGGGTGTCACCTGAGCCCTCCCCTCATCGATCTATCCAATTAGAGGACAGAGTCACTCTACACCTTTGACGGCCTGGCTATAGGACGATAAACTGTATCTTTCTGCGGTGTTCTGTCTAGTGGGGTTTTGCTGCTGATATTTTTTGTGACGTGGTAAATTGTCATTTTGGATTTTGACTTAGTCATATTGTTTCATGGGTAGATTCACATGAGAGAATTGAAGATACGCTCTTGACCTGATCAGCTGTTCTGCACCAtcagcacacagacagacccCCCATGGCTTTACTCCCAGACATGGATTTACAGCATTGAGCCCGTAGAGGGCACTACATGAACAGAAATTGGGTGTCCCACTGACAACTTTAGAATAGAACACCCTGGCTATGTCCCAAAGCTCTTTAACATTTACTTTCCTCATCTCCTTTCATTTATGTCACTGAGGAGGGGGGAATGATATAGTATAGGTGTTGTGTGATATTTAACTGTCAAACATTTTAAAGTCCTATGGCAAGAGAAGTGAGGAAAGGAGATGGTATATTATGTTTGGGCTATTGGGACATGGTCATGATATGTCATGTGTACCTATGGTTTCCATGGTAACATAGGTCAAATGTTCCTGACCTCTGATCTCCACCATTCCACTTCTCACTTACCCAGGAGGTGTTTTTATGTCTGCACCAATCGAAACTAATCACCCGACCAATGCCTGAAACTCTGCTTTTTGTGGTCTTCTGTATTACTGCTAAGTGTCAGCATATATTTTGATATATTTAACAATGAGGGATCTAAAAGTCTAGATATTTTTGGAGTAGATAAAGGATGTGTGTATCAGATAACTGTCACTTTGTCATGCTCTCTGAAAATCTATTGGGTTTTTGGTAAGAATTCTAGAATCCCTGCTGATGTAATGTTCCATTGAAAGACTATTTATAAAGTTTAAGTCCTTTGTGAAAAAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU384658 lncRNA upstream 70186 29330943 ~ 29363159 (+) True G339859
TU384661 lncRNA upstream 71318 29329904 ~ 29362027 (+) True G339862
TU384743 lncRNA upstream 76647 29355831 ~ 29356698 (+) True G339937
TU384744 lncRNA upstream 76683 29356197 ~ 29356662 (+) True G339938
TU384663 lncRNA upstream 199803 29233340 ~ 29233542 (+) True G339864
TU384848 lncRNA downstream 36765 29498147 ~ 29498534 (+) True G340011
TU384922 lncRNA downstream 186080 29647462 ~ 29647784 (+) True G340081
TU384950 lncRNA downstream 222438 29683820 ~ 29684213 (+) True G340106
TU384954 lncRNA downstream 223970 29685352 ~ 29685606 (+) True G340107
TU384974 lncRNA downstream 276611 29737993 ~ 29738401 (+) True G340125
XM_021600852.2 mRNA upstream 85181 29339536 ~ 29348164 (+) True LOC110522451
XR_005051513.1 mRNA upstream 247308 29182879 ~ 29186037 (+) True LOC118964461
XR_005051514.1 mRNA upstream 256451 29175326 ~ 29176894 (+) False LOC118964462
XR_005051515.1 mRNA upstream 256451 29175326 ~ 29176894 (+) False LOC118964462
XR_002473315.2 mRNA upstream 269463 29153474 ~ 29163882 (+) True LOC110522450
XM_021600858.2 mRNA downstream 2573 29463955 ~ 29478206 (+) False LOC110522453
XM_036976071.1 mRNA downstream 2573 29463955 ~ 29478206 (+) False LOC110522453
XM_021600856.2 mRNA downstream 5400 29466782 ~ 29478206 (+) True LOC110522453
XM_021600860.2 mRNA downstream 18794 29480176 ~ 29632371 (+) False LOC110522454
XM_021600863.2 mRNA downstream 18794 29480176 ~ 29632371 (+) False LOC110522454
TU384729 other upstream 96406 29335369 ~ 29336939 (+) True G339928
TU384628 other upstream 266349 29166518 ~ 29166996 (+) True G339830
TU384441 other upstream 517806 28914599 ~ 28915539 (+) True G339693
TU384407 other upstream 574190 28858716 ~ 28859155 (+) True G339660
TU381324 other upstream 1831789 27590852 ~ 27601556 (+) True LOC118964415
TU387608 other downstream 1920444 31381826 ~ 31382749 (+) True G342538
TU387623 other downstream 1956573 31417955 ~ 31419256 (+) False LOC110522493
TU387645 other downstream 1989751 31451133 ~ 31451476 (+) True G342571
TU387844 other downstream 2324483 31785865 ~ 31786206 (+) True G342707
TU389208 other downstream 3233604 32694986 ~ 32704371 (+) True G343958

Expression Profile