RNA id: XM_021600856.2


Basic Information

Item Value
RNA id XM_021600856.2
length 2147
RNA type mRNA
GC content 0.46
exon number 7
gene id LOC110522453
representative True

Chromosome Information

Item Value
chromosome id NC_048568.1
NCBI id CM023222.3
chromosome length 46841314
location 29463955 ~ 29478206 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ggggtttcTCGTGCCAAAGAGGCTCAGTCTGAGGGATTATCATTGTGCTattgtataacacacacacacacacacacacaccaaacccctCACTTTAGGCCAAATTGGAGAGGATAGGAGTGTATAGGCATGAtcaaacactaacacacacccctacacacacacacacatgcacacgcaatCTCAGATCAAGGCTTGAAGCAATGTTGTAAACATCAGCATGCCCCACAACAGCAGAcactacccagagagagagggagcgtgataaaggagagaccgagagaaaaaACCCTTAATAATGTTTCATAACCTCACCATGGACTCAGTCTTTGTGACCTGGATTTGATGCTGTTACAGAGGAAaacaggacaggaagagaggagaggacagttgtTGTGATATACATTTTGTGATCTTggtgtgaggctggttggagcggagaggaagggagaagagctctgtgtgtgttctactgtgtgACAGAACTGGAACAGAGGATGGAACAGTGGAGATGAGAACACTAGCCAGTggaacacaaagagagagagagagctggcaaTCACTAGGATGGAGGAAGATATTGTCTGTCAGACagtggaagagagaaggaggaggagttcTAGAGTGGAGGAAGGGTTACCCAGTATGAGGAATCTTTATGACATCTCCTCACTAGACAGGGTTTCCAAAGATGACCGCAGCTCTGCAGCGAGCGGGATAGATGTAGCAGACCGCCTGACATACCTGGAGCAGCGGATGCAGATGCAGGATGATGAGATCCAGCTTCTGAAGATGGCCCTGGCAGACGTCCTCAAGAGACTCAACATCTCAGAGGAACACCAGGCCACCAACGCCAAGAAAGGACCTGCTGAGAAAGCAGCTAGGCCTGTGTCTCTTGCCCTGCCATCCAGACCATCAATGAACAGCCTTGCCTCTCTGAAGAAAAGCTCCACAAGCTCTACAATGCCCTCTACCTCCACCGCACGGAACTACAGTCCCTTACCAGGAGCATCAGCCAAGAGtGGTGTGAAGAGTTCAGCAGGCAGTTTGAAGGACTGTACCTCTAAGACTCGGCCAGGCCCCCGACCTGGCCCCTCAGGATCAACAGTGGCCCCCGGCAGTAAGAAAGGCGATAGCAAAACCAAGGAGCCTGCAGCCAGTGTAGGGTCGAGGCGTGTGACGCACTGTAAAGTGACTATGCAGATCTATCTGAGCCCCCAAACAAAAAGGACTGGGTCTTCTGAAGTGGCCAAATCAGCCCCCACGGTCCCCAACTCCAGACCAACCAGAACCCCCACCTCCCCTCAGACCAAAGGAGTCCCCCCGACCTCCGACCGGACCAAGACCAAGACACGCAAAACACACCCTGCCTTCACCCTCCCCCTGCAGAAAAGCACCAATCAGAATACGTATTCTCCTCTGGACACGTTCAATTACAAAAGCCCCCTCAAATCACCAAGCCATTACTTCCAAATCTGTTACTAGGCAATAGAGTAGGCTATGAGGATGTAGAAGTTGCTATTAAACACAGGTCTAGGGTCAGATATTGTTCTAATCCTCATAATGGTTAGGGTTGGGTAATCTAATCCTAGATCTGTAGTTAAGGGCAATTTATATTTGGGCTATTACAAGTGTAGGCCTGTAAGAGAAATCGGTTTTCCAGATGTTTGAAAATGTATAGCAGTGAGGTATTTACTGTGGAAGTGGAGGTTGTCTTTAGTAATGTTTGAGATGGACTGATAGTTACAAAGTTTGGGTTTTGAGGTTTTTGTTTGACCAGAAAAGAGAATAGTGAGTTTATTTGATTGTTTTGTTGAATTTCCTAGCACCATCAGTGACCATAGTCCTCTTCACTTTGTTCTCTGTAATTTCTTACATATTTATGTCAACTTGAAGCCTCTATTTTTTTCTGCTGTTTCTTTCTGTCTTAATGTCTCATTTatgttttacattttagtaatttagcagacactcataTCCAGTTTAGTTTATTTGTAGCTTTATGTCAGTAAAATATGGATGTATGAGTTTTCATTGAAATCTCCTTGACTTTGAGGGggatgtacagtatgagtgaatTCTCTTATTCGATGTCTGTGTGTATCTCCGTCTCTGTTGACAGCCATTAATAAACATTTCAGTGATCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU384757 lncRNA upstream 5586 29460034 ~ 29461196 (+) True LOC110522452
TU384658 lncRNA upstream 103623 29330943 ~ 29363159 (+) True G339859
TU384661 lncRNA upstream 104755 29329904 ~ 29362027 (+) True G339862
TU384848 lncRNA downstream 19941 29498147 ~ 29498534 (+) True G340011
TU384922 lncRNA downstream 169256 29647462 ~ 29647784 (+) True G340081
TU384950 lncRNA downstream 205614 29683820 ~ 29684213 (+) True G340106
TU384954 lncRNA downstream 207146 29685352 ~ 29685606 (+) True G340107
TU384974 lncRNA downstream 259787 29737993 ~ 29738401 (+) True G340125
XM_021600854.2 mRNA upstream 5400 29422294 ~ 29461382 (+) False LOC110522452
XM_036976070.1 mRNA upstream 5400 29422294 ~ 29461382 (+) False LOC110522452
XM_021600855.2 mRNA upstream 5400 29433345 ~ 29461382 (+) False LOC110522452
XM_021600852.2 mRNA upstream 118618 29339536 ~ 29348164 (+) True LOC110522451
XR_005051513.1 mRNA upstream 280745 29182879 ~ 29186037 (+) True LOC118964461
XM_021600860.2 mRNA downstream 1970 29480176 ~ 29632371 (+) False LOC110522454
XM_021600863.2 mRNA downstream 1970 29480176 ~ 29632371 (+) False LOC110522454
XM_021600859.2 mRNA downstream 27736 29505942 ~ 29632371 (+) False LOC110522454
XM_021600861.2 mRNA downstream 27736 29505942 ~ 29632371 (+) False LOC110522454
XM_021600862.2 mRNA downstream 27736 29505942 ~ 29632371 (+) False LOC110522454
TU384729 other upstream 129843 29335369 ~ 29336939 (+) True G339928
TU384628 other upstream 299786 29166518 ~ 29166996 (+) True G339830
TU384441 other upstream 551243 28914599 ~ 28915539 (+) True G339693
TU384407 other upstream 607627 28858716 ~ 28859155 (+) True G339660
TU381324 other upstream 1865226 27590852 ~ 27601556 (+) True LOC118964415
TU387608 other downstream 1903620 31381826 ~ 31382749 (+) True G342538
TU387623 other downstream 1939749 31417955 ~ 31419256 (+) False LOC110522493
TU387645 other downstream 1972927 31451133 ~ 31451476 (+) True G342571
TU387844 other downstream 2307659 31785865 ~ 31786206 (+) True G342707
TU389208 other downstream 3216780 32694986 ~ 32704371 (+) True G343958

Expression Profile