RNA id: XM_021600861.2


Basic Information

Item Value
RNA id XM_021600861.2
length 3023
RNA type mRNA
GC content 0.46
exon number 13
gene id LOC110522454
representative False

Chromosome Information

Item Value
chromosome id NC_048568.1
NCBI id CM023222.3
chromosome length 46841314
location 29480176 ~ 29632371 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ctctctctctctctctctctctctctctctctctttctctctcgctctctctctctttctcgctctctctccacttaAAATTCCAAAAAGGGCTCTCATCTCTCATTCAGTGCTCTCACTCGACTGAGGGCTGCTTTTGCATTGTTAATttattctctttttctctctctttctcttttataTTCTCTCATTGTTCTAAAATATCCCTGCTGTGGAAGAGGATGCATTGATGAAAAAGGACCCAAAAAATGAGACATTTTTTATttgctgtctttttctctctcaaggAGTTCTCATTGGAAGTGTCTTTGTTCTTTTATTTCTATTTATTCATGTATGTCCTTTCCGCTCCTTGTACGGCTGTGTTGCTACTACGGAAAAAGGTTAGTGTGTCTGTGAGGAGCCAGCAGAAGTGAtcgagtgaagagaggagagggggatgccTGGCTGTATCGCGCTGTGACTGTGAATCCACGACCACCCCGGAGAGACGGTGACTGGGATGCCATCGTTCCCCTTAGAACTCTCTCGTTAACTAACCCCACAGCTTTGAACGCCACAGCCTGGAACGCCACAGCCTGGAACGCCACAGCCTGGAACGCCACAGCCTGGAACGGACAGATCAGGGATAAGGAAAGAAGAAAgaaaagagacacagagaaaggagagaaatcCTTCCATCGTTCCTGTAGCAGGGTTGTGCTGTGCGTCTGATGTGCGGTAGCTGCCAAGCACCATGGATATAAACGTGCAGTCTCACCGGTTCTACTTCCCTCAGATCTACTGTACTGAGGCAGTGCCTGCTGGAGCCCAGGTCCAGGTCACAGCGCAGGAATTTAAAGTCAGTGAGCAGAGTATCTGCCAGGCGCGAGCTTCTGTCATGGTGTATGATGACAGCAGTAAGAAATGGGTTCCCATTAAGCCAGGCCAGCAGGGCTTCAGCCGCATCAACATCTACCACAACACTGCCAACAACACCTTCCGCGTGGTGGGAGTCAAACTACAAGACCAGCAGGTAGAGGTGGTGATCAACTACTCCATAGTGAAGGGGCTGAAGTATAACCAGGCCACGCCCACCTTCCACCAGTGGCGTGATGCCCGCCAGGTCTACGGACTCAACTTtgccagcaaggaagaagccaccacATTCTCCAATGCCATGCTGTTCGCTCTCAATGTCCTCAGCACTCAGGacggagGCCCAGCAGTCCAGCGCCAAGTCCAGAATGGGCCCACTACAGACGAGATGGAGGTGCAGAGAGCAAGACAGGTTATGGAGCAGCAGCAGAAGCAGGCACACATGGAGAGGGAACGACGATCCTCGAACCCAGGTTCTCCTTTCCAAGGCCATCCTGGTGTGCTTTCTGTAGCCCCCCCAGCTCCCATGCCTCCCCCCATGTCCATGGGTTGTGGCCCCTCCTCTTTAGGTGGAGGACCCCCCTCCCTGGGTGCCTCTATGCCTCCTCCCCCTCCTGGCCCACCTCCCCCCTCGGAAGGTGCTCCCCCGCCCCCTCTGCCTCCACCGCTGCCCATGGTTGGAGGCGGACAGGGTGAAGAGGCTCCTGCCCCAACGGGACTCGCCGCCATGATCGCTGGAGCCAAACTGCGCCGTGTCAATAGAccTGAGGACTCTAACTCTTCAGGATCGGGGACCAAAAACGAAGCCAACCGGACAAGTGGTGGCAGCGGAGGACTGATGGAGGAGATGAACGCTCTGCTGGCGCGGAGGAAAGCAGCATCAGAGAAGCCTGAGGACAACCAAATCGATGACCCCAATAGGTCCCCTTCCCCCGGCATCAAGGGTGGACAGAACGCCACAGATGGCGTGAAGAAGCCATGGGACAGAGCCAACTCTGCAGAGAGGTCATCACTGGTATCAAGGGTACGACCTGTGGGGAGCAGCAGCGACACAGATGCCTTAGACTTTGACAGAATGAAGCAGGAAATCTTGGAAGAAGTTGTTCGTGAATTACACAAGGTGAAGGATGAGATCATTGATGtcATTAGACAAGAACTGAGCAGAATCAGCACGACATAATCTGTCATGTACCTTTTGGAACCATTGTCCCCACGGCAACCACTGCTGTGTCTGAGGAGGCAAGGAGAGGATCGAGGCCCGAACTACAACCATTTATTTATTCACGTTGCTGTGATGTTAAAGCAACGTGACAATGTTGCTGTAACACTACAGGAACAGTTTGTTTACGTTCCGTTTGGAAGAATGGGATGGATGGAGGACACTCTCGCACTGAttttttcactttctctggtcttgtttttctctttttttctttctctatctGTCCATCGGTAACCAATGTTTACTGTTCTGTTTCCCGTCTTAAAGGAAACAATTATGAAATTCAATTAAGTAACATCTTGGTTTTCTAGGAGTTTTTATTTATAAAATGTTTGTTTGACATTATTATTACTATCATTGTCATTAATATgactattatttatattattgtaGATGTAATGGTGTGAATATAAGTAGTAGCAGTTTTAGTGACGACAATAGTAacaaaattattattataatgacaCTGATGATAATCATTTTATGTCAgccttttatattttatattgtaATTTTTTTCTCTTTTGATTTTGTTTTAAAATACAATTATAAGCACATACGGATTTATTTCTCATGACCTGACCTCAACATTTTTAAAGAGTTTTGTATCCTTTTTCGCCaaacacaattgtgtgtgtgtgtaatcactgactgaaatattttttaaaacaggTCTTGAACCTGAAAGAGAGGGTGGTATATAAACTATTGCTCTTTGGATATTGCAATCTTATGAACAAAAAAAGAATAATACACCACAGTATTTGTGATCATGTTGTTAATAAAATGTTTATTGGCTGCAACGATATGGTGAAGTattgtttgttttattatttccTTTTATGACCAAGTGCTTCctggtaaaaaaaatatgttatatatatacacacactaaaatgatttcaaataaaactgtgaacaATGTCTTGGAAAAATGAAGTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU384848 lncRNA upstream 7408 29498147 ~ 29498534 (+) True G340011
TU384757 lncRNA upstream 44746 29460034 ~ 29461196 (+) True LOC110522452
TU384658 lncRNA upstream 142783 29330943 ~ 29363159 (+) True G339859
TU384922 lncRNA downstream 15091 29647462 ~ 29647784 (+) True G340081
TU384950 lncRNA downstream 51449 29683820 ~ 29684213 (+) True G340106
TU384954 lncRNA downstream 52981 29685352 ~ 29685606 (+) True G340107
TU384974 lncRNA downstream 105622 29737993 ~ 29738401 (+) True G340125
TU385004 lncRNA downstream 137435 29769806 ~ 29770443 (+) True G340153
XM_021600858.2 mRNA upstream 27736 29463955 ~ 29478206 (+) False LOC110522453
XM_036976071.1 mRNA upstream 27736 29463955 ~ 29478206 (+) False LOC110522453
XM_021600856.2 mRNA upstream 27736 29466782 ~ 29478206 (+) True LOC110522453
XM_036976070.1 mRNA upstream 44560 29422294 ~ 29461382 (+) False LOC110522452
XM_021600866.2 mRNA downstream 1305 29633676 ~ 29640472 (+) False LOC110522456
XM_021600870.2 mRNA downstream 1306 29633677 ~ 29640472 (+) False LOC110522456
XM_021600872.2 mRNA downstream 1311 29633682 ~ 29640472 (+) False LOC110522456
XM_021600868.2 mRNA downstream 1525 29633896 ~ 29640472 (+) False LOC110522456
XM_021600869.2 mRNA downstream 1525 29633896 ~ 29640472 (+) False LOC110522456
TU384729 other upstream 169003 29335369 ~ 29336939 (+) True G339928
TU384628 other upstream 338946 29166518 ~ 29166996 (+) True G339830
TU384441 other upstream 590403 28914599 ~ 28915539 (+) True G339693
TU384407 other upstream 646787 28858716 ~ 28859155 (+) True G339660
TU381324 other upstream 1904386 27590852 ~ 27601556 (+) True LOC118964415
TU387608 other downstream 1749455 31381826 ~ 31382749 (+) True G342538
TU387623 other downstream 1785584 31417955 ~ 31419256 (+) False LOC110522493
TU387645 other downstream 1818762 31451133 ~ 31451476 (+) True G342571
TU387844 other downstream 2153494 31785865 ~ 31786206 (+) True G342707
TU389208 other downstream 3062615 32694986 ~ 32704371 (+) True G343958

Expression Profile