RNA id: XM_021600894.2


Basic Information

Item Value
RNA id XM_021600894.2
length 3092
RNA type mRNA
GC content 0.52
exon number 15
gene id LOC110522470
representative True

Chromosome Information

Item Value
chromosome id NC_048568.1
NCBI id CM023222.3
chromosome length 46841314
location 29942176 ~ 29952127 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTTGGTTACGTTGTAGTGAACCCACCCGCATGACACTACAGTACGCATGTGCGTCTACTGTGCCTTTCCTCGAAGTTGTCGCTGGAGAATGAGAGTAGAAACGCGGCTACATGTTGTTGGTTAGATTAGTTTGAAGTATATGAAATACGCATTTGTCTCATCTAATTTTCATGGAAGATACTGACGAGCCCATGACAGGGATGTTGGACACAGACAGCTCTGAGAGTGGGGACTCCCCAGCCATGGAGGGCAACGGAGATGGCTTCCTCCCAGACCTGCCTGTCCTCGCGCACCCTGCTGAATGGACCATGGACCAGGTTCCCCCTGACAACCTCACCACAGTTATCCACGACACTGACTCAGAGTCAGATCAGTCATCACCGGAGGTAATCAAGCAGCACCAGGACCAGCAgtctgatctgggatcagttgaACAAGCAGTGCAGCACTTCCAGCTAGCGAGTGCCAAGCTCTTCCAAGAGGAGGATTCAGATGATCAGTTTTGTTCTCCCCAGGTAGAACAACAGAACCAAATGGAAGCTTTGTCAGAAGAAGAAAGCAAGGAAGGACAGAACAACCAAGAGGATGCCACAGAGTCTCTAATGCAGGGTGAGAAGATGTCAGAGGCTGTAGAACAGCAACAAGATCCAGCCCAAGCCCAGCCACCAATGGTTGCGGAAGATGGAAGCCCAGCTAACATGGAGCTGGAAGAATCCAAAGAGATGACAGAGCAGGGGGAAcctgttgaggtaccagctgaGGAACCAGCTGTCCCCACAGAGCCCCTCATCCCTGCTGAATACGAGAAGCTGGCTAAAGGGTGTGAGGAGAACCCTGAAGACTTCAATGGTTGGGTCTACCTGCTGCAGTATGTGGAGCAAGAGAATCATCTCGGTGTTGTGAGAAAGGCGTTTGATGCGTTTTTCCTGCACTACCCCTACTGCTACGGCTACTGGAAGAAGTTTGCTGATACTGAGAAGAAGCATGGCAATGTGCAGGTGGCAGAGGAGGTGTACCGGCGAGGTGTGCAGGCCATCCCCCTCAGTGTGGATCTGTGGCTTCACTACATGTCCTTCATCAAGGACAACGCTGACCATGAAGACCCAGAGACACCAGGACGCATTAGAGCTGCGTATGAGCATGCTGTGTTGGCAGCAGGGACAGACTTCCGCTCTGACCGTCTATGGGAGGCCTACATCAACTGGGAGATGGAGCAGGAGAAACTGGCTAATGTCACGGCCATCTACGACCGCATCCTGGGCATCCCCACCCAGCTCTACTCACAGCACCTCCAGAGGTTCAAAGAGCATGTGCAGAACAACAACCCCAAACACTTCCTGTCAGAGGAGGAGTTTGTCCAACTGAGGGTGGAGCTAGCCAAAGCCAACGTAGCAGCTGCAGCCAATGGGGAAGGAGAGGACACAACACCTGCCGACGAGCTCCCGCCAGGCACCGAAGACCTCCCAGATCCTGCAAAGAGAGTGACGGAGATTGAGAACATGCGACACAAGGTGATCGAGTCACGCCAGGAGGTGTTCAACCAAAACGAGCAGGAGGTCAGCAAACGCTGGGCCTTCGAGGAAGGGATAAAACGCCCCTACTTCCATGTCAAAGCCCTGGAGAAGACCCAGCTCAGCAATTGGAAGGAGTACCTGGACTATGAGATCGAAAACGGCACTCCCGAACGTGTGGTCGTTCTGTTCGAACGCTGCCTCATCGCCTGTGCTCTTTACGAGGACTTCTGGACAAAGTATGCAAAATATATAGAAGGCTACAGCATTGATGGAGTAAGACATGTGTACAAGAAGGCGTGTACCATCCACCTGACCAAGAAGCCCAACATTCACCTGCTGTGGGCTGCGTTCGAGGAGCAACAGGGGAACATAGCGGAGGCGCGCCGTATCCTGAAGGCTCTGGAGGCTACGGTACCAGCCCTAGCTATGGTGCGTCTGCGGCGGGTCAGCCTGGAGCGGCGCCACGGCAACCTGGAGGAGGCGGAGGCCCTGCTGAGGGAGGCGATTGCGGCGGGGAAGAACACCAGTGAGACGTCGTTCTACGCCGTGAAGCTGGCCCGGCAGCTGCTGAAGGTGCAGAGAAGCCTCGCCAAGGCCCGCAAGGTGCTGCTGGACGCCATAGAAAAGGACCAGGCCAGTGCTAAACTGTATCTGAACCTGCTGGAATTGGAGTACAGTGGGGATGTGCAGCAGAACGAAGCGGACATCTTGGCCTGCTTCGACCGTGCACTGAGCAGCCCGCTGCCCCTCGACTCCCGTCTCACCTTCTCTCAGCGCAAGGTTGAGTTCCTCCAGGACTTTGGCAGCGACATCAACAAGTTAGTGACTGCGTACGATGAACACCAGAAGCTTCTGAAAGAAAACGAGTCGGCAAAGAGGAAAGCGGAGAATGGCTCACAGGAAACCGAATCGAAGAGACAGCGTACAGACGAGCACTCAGGCTCAGGGCACATGATGCAGGGAGATGTGCAGGGTAACAACTCTGCCTACAACTACAACTGGTACCAGCAACAGTACAACAACTGGGGACAGAACTCCTGGGGACAGTACAACCAGTATTCCCAGCAGTATAACCAGTACTACCCCCCTCCACCCACATAAGGTCTTGCAGACCgaaagggagatgagaggaagcaTCTTTCTACCCAGCCCAATTGCTCATCTCAGCTAGCCCCGCCTCCTGTGTGACGTAATTTGTTTCAATTGGCCATTAGATTGGCACATTTACTGTCATCACCATTGTCATTCATTCATTGGCCGGCTGCTTTTTGTGTTGCTTGCACATGTGTTGATGCGGACTTCATTTTCTCAGTTGAAAAAAGCAACGATGTTTTCAATTTTTTGATTGACTGCATAATTTGGTTCCTCTTCGATATCTCAGTGGGGGGAATCTAGTTATGTTTGATACAGATTATATATTTGTATGGaggtagtggtaccagctatgcTCCTCCCTGAGCCTCTTCTCTGCTTtcctaaaatgtgagatttttaaGATGAAGGTTTTTGTTTCCTGGGACAAAAACAGAAATGAATGgaaatgtttgtttatttcataATAAAGAGATGAATATCATA

Function

GO: NA

KEGG:

id description
K13217 PRPF39, PRP39; pre-mRNA-processing factor 39

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU385112 lncRNA upstream 2061 29939828 ~ 29940116 (+) True G340247
TU385110 lncRNA upstream 8303 29933621 ~ 29933874 (+) True G340245
TU385109 lncRNA upstream 8782 29933158 ~ 29933395 (+) True G340244
TU385108 lncRNA upstream 9482 29932476 ~ 29932695 (+) True G340243
TU385107 lncRNA upstream 9874 29931825 ~ 29932303 (+) True G340242
TU385123 lncRNA downstream 20035 29972162 ~ 29972386 (+) True G340258
TU385124 lncRNA downstream 21220 29973347 ~ 29974350 (+) True G340259
TU385125 lncRNA downstream 23015 29975142 ~ 29975459 (+) True G340260
TU385128 lncRNA downstream 25948 29978075 ~ 29978330 (+) True G340263
TU385133 lncRNA downstream 36268 29988395 ~ 29989043 (+) True G340267
XM_036976075.1 mRNA upstream 99267 29838369 ~ 29842910 (+) False LOC110522467
XM_021600887.2 mRNA upstream 99267 29839866 ~ 29842910 (+) True LOC110522467
XM_021600884.2 mRNA upstream 144037 29787568 ~ 29798140 (+) True LOC110522463
XM_021600882.2 mRNA upstream 214976 29717778 ~ 29727201 (+) True LOC110522461
XM_021600876.2 mRNA upstream 235376 29686032 ~ 29706801 (+) True LOC110522458
XM_021600897.2 mRNA downstream 334 29952461 ~ 29957558 (+) True LOC110522472
XR_002473324.2 mRNA downstream 844092 30796219 ~ 30797684 (+) False LOC110522479
XR_002473325.2 mRNA downstream 844092 30796219 ~ 30797687 (+) True LOC110522479
XM_021600906.2 mRNA downstream 864289 30816416 ~ 30823059 (+) False LOC110522477
XM_021600904.2 mRNA downstream 865675 30817802 ~ 30823059 (+) False LOC110522477
TU384729 other upstream 605238 29335369 ~ 29336939 (+) True G339928
TU384628 other upstream 775181 29166518 ~ 29166996 (+) True G339830
TU384441 other upstream 1026638 28914599 ~ 28915539 (+) True G339693
TU384407 other upstream 1083022 28858716 ~ 28859155 (+) True G339660
TU381324 other upstream 2340621 27590852 ~ 27601556 (+) True LOC118964415
TU387608 other downstream 1429699 31381826 ~ 31382749 (+) True G342538
TU387623 other downstream 1465828 31417955 ~ 31419256 (+) False LOC110522493
TU387645 other downstream 1499006 31451133 ~ 31451476 (+) True G342571
TU387844 other downstream 1833738 31785865 ~ 31786206 (+) True G342707
TU389208 other downstream 2742859 32694986 ~ 32704371 (+) True G343958

Expression Profile