RNA id: XR_002473324.2



Basic Information


Item Value
RNA id XR_002473324.2
length 937
RNA type mRNA
GC content 0.43
exon number 3
gene id LOC110522479
representative False

Chromosome Information


Item Value
chromosome id NC_048568.1
NCBI id CM023222.3
chromosome length 46841314
location 30796219 ~ 30797687 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


ACTACCTAGCCAGGGTCTCTCTGACTGCTCTGCTGCAATGTGTCTTAATCTCACACCTGTCTGTCGACGCTGCAGGCATGAATCTCTTTGCTTACCCCACAGGGGCGGGTGGCGACTAGCTATGTAAGAGAGCTTCAAATGATTCCTCATAGGTATTAAAATGCATAGGCTATCTagctatggcaagacatgaaaaaacacatgaagaaaatgaacaacttaCATAACCGTAGCAATTCAATGGCTGTCGTTTTGACAAGAGGCTCGTGTCAGTCCCCATTGAAATAACAACTCTGGAATAGATCTCTTCAGTGAGGCAAAGCTATTTCAGAAATGCAGCTTAAGAAGCTCTTGATCCAGGCGTCCTTGAGTTTGGGCTCCTGCTTCATAAAACATCCTCCACCAACAAGCAGCGACAGGTCGCCATGGTGGGGCATCGTGAGTGTGTGCAAGAGGGAAGGCATTTCCATGGTGATCGGCGGCTGGCTGACCTGCATTTCAAATACAAACGCATGCGTCTATTCTGATATAACCTACATTTCCTGGGAAAGGATCCTGGCCTCTTCTACCCTGGAATCACAAAGCTGTCACTGCAGTCTTCCATGAATAATCTCCGGACTCTCAATGGCAGAGATGTTGTCACGGAAACCAGTCTGGCAGCCACTTTAGAACCGTCAACATGCATGACAGCTAATTTTCTACCCTgaatttttttacttttaaatgaATTAAATAGCCATTGATTCTCAAAGAATATGACATAAATGTCTAACAAGCTTAGTTGAACTGTCTTACCCATCAGAACCCCAACTATATGCTTGCTTTAGACAATTGTTTGTAAACCAAATCATTGTAAACAAtgtatagcttcaaaacatgATTAAAACTATGATTTTGATCTCTTGTatagtcagtccttgcatccatagctccatct

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU386885 lncRNA upstream 42015 30753318 ~ 30754204 (+) True G341880
TU386883 lncRNA upstream 44473 30751084 ~ 30751746 (+) True G341878
TU386781 lncRNA upstream 49904 30724762 ~ 30746315 (+) True G341781
TU386300 lncRNA upstream 311702 30482577 ~ 30484517 (+) True G341339
TU386193 lncRNA upstream 473969 30322043 ~ 30322250 (+) True G341235
TU386918 lncRNA downstream 2611 30800295 ~ 30802694 (+) True G341912
TU386920 lncRNA downstream 7709 30805393 ~ 30805615 (+) True G341914
TU386914 lncRNA downstream 15914 30813598 ~ 30814599 (+) True G341909
TU386927 lncRNA downstream 27869 30825553 ~ 30826284 (+) True G341921
TU386928 lncRNA downstream 28866 30826550 ~ 30826954 (+) True G341922
XM_021600897.2 mRNA upstream 838661 29952461 ~ 29957558 (+) True LOC110522472
XM_036976080.1 mRNA upstream 844092 29942176 ~ 29952127 (+) False LOC110522470
XM_021600894.2 mRNA upstream 844092 29942177 ~ 29952127 (+) True LOC110522470
XM_036976075.1 mRNA upstream 953309 29838369 ~ 29842910 (+) False LOC110522467
XM_021600887.2 mRNA upstream 953309 29839866 ~ 29842910 (+) True LOC110522467
XM_021600906.2 mRNA downstream 18732 30816416 ~ 30823059 (+) False LOC110522477
XM_021600904.2 mRNA downstream 20118 30817802 ~ 30823059 (+) False LOC110522477
XM_021600907.2 mRNA downstream 20118 30817802 ~ 30823059 (+) True LOC110522477
XM_036976090.1 mRNA downstream 371967 31169651 ~ 31182712 (+) False LOC110522488
XM_021600917.2 mRNA downstream 372006 31169690 ~ 31175097 (+) False LOC110522488
TU384729 other upstream 1459280 29335369 ~ 29336939 (+) True G339928
TU384628 other upstream 1629223 29166518 ~ 29166996 (+) True G339830
TU384441 other upstream 1880680 28914599 ~ 28915539 (+) True G339693
TU384407 other upstream 1937064 28858716 ~ 28859155 (+) True G339660
TU381324 other upstream 3194663 27590852 ~ 27601556 (+) True LOC118964415
TU387608 other downstream 584142 31381826 ~ 31382749 (+) True G342538
TU387623 other downstream 620271 31417955 ~ 31419256 (+) False LOC110522493
TU387645 other downstream 653449 31451133 ~ 31451476 (+) True G342571
TU387844 other downstream 988181 31785865 ~ 31786206 (+) True G342707
TU389208 other downstream 1897302 32694986 ~ 32704371 (+) True G343958

Expression Profile