RNA id: XM_021600907.2


Basic Information

Item Value
RNA id XM_021600907.2
length 2078
RNA type mRNA
GC content 0.53
exon number 3
gene id LOC110522477
representative True

Chromosome Information

Item Value
chromosome id NC_048568.1
NCBI id CM023222.3
chromosome length 46841314
location 30816416 ~ 30823059 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TCTTGAGAGACCCTATGGAGTAATGCATTGTGGGAGTCAAAGCTAGGCAGTGGTTCCGTATTTGGTACTTCTTGCCaacgtaagctagctagctagctggctaatgtgtTATTTTGCCCCGAAATTGGGAGCAGGAGAGAAGGAATGGAGGAGAATGAATACCTCGATTCACCGCACTGTTAATTTCGGCAGAGAAAGCTGCACAGCACGACTAATATTTTAGTGGGTTCCATGCACAACTCTACACTGCAGCCTCTGAGACCAACATGCCTTATGGGAATCTCACATGGCATCACTTATATTCCACAAAGACACATGTCTACATTCTAAAAATGTGTGCTAGCAACAAGTGTTAGCAACCAACAGAATTGTAAACTGTTTTCTATcaggactccctgcctgcctcctttCCTGCCTGCCTCTCCCAAGCACAGCAGTGCCATTAGAAATTGCAAACCTGCCTTTTTTCAGTTTCTCTACAATCAACTCCTCTCCTTCCCAAGGGGGGTGACTGCCTGTCATGAGATTCCGAGTCTACAAGAGGAAGGTGGTGATACTGacgctggtggtggtggtgtgtggccTAGCCTTCTGGACCAGTGGGAAGCAGAAGAAGAGCAGTGGGGTGGTGGTCCTGAAAGAGGCTGAGGGGGCGAGGAGAAGCAGCAGTAGCCAGGTGCAGCCACAGCCGCAGGCCACACCTGCAGTCAGCCGGATACCTAACCTACCACCCATCGCACCTGTCAACGAGACACACCAGAAGAACCAGCCTGAAAAGCACCTGGAGAAAGAGGAGGTGGTAAAACCAGAGGTGGACAACACCACCCAGGTCTACCGTGGCATTGTGTTCCAGCTCAACTTTGACCAGACAGTGAGACATGAGGAGCAGTTCAGGGCAGCGAGGAAGAAGGATGATCTGGTGGTGGTGGTCCAGGTGCACAACAGACCTGACTACCTGAGGCTGCTGGTGGAGAGTCTGAGAAAGGCCAGGGGCGTGGAGAGCATCCTGCTCATCTTCAGCCACGACTTCTGGTCCCCCGAGATCAACCAGGTGGTGGCCTCAGTGGACTTCTGCCAGGTTCTCCAGATCTTCTTTCCCTTCAGCATCCAACTGTACCCCCAGGAGTTCCCGGGCCACGACCCCAGGGACTGCCCCAGAGACATTTCCAAGATAGACGCCTTAAAGCTGGGCTGCATCAACGCAGAGTACCCCGACTCGTTTGGCCACTACCGCGAGGCCAAGTTCTCCCAGACCAAGCACCACTGGTGGTGGAAGCTGCACTTTGTGTGGGACAGGGTCCGGGCCCTGAAGGACCACCGGGGTCTGGTGCTTCTCATCGAGGAGGACCACTTCCTCTCCCCTGACTTCCTCCACTTCCTCAAGCTGATGTCCATCCTGAAGAGGGAGAATTGCCCTGACTGTGACATCCTATCTCTGGGGAGCTACGGCCACATCAGCTACCCCAGTAAAGCCAACAAGGTGGAGGTGAAAGCCTGGAAGTCCACCGAGCACAACATGGGCATGGCTCTGAGCAGGGAGACCTACCAGAAACTCATTCAATGCACCGACGCCTTCTGCACCTATGACGACTACAACTGGGACTGGTCCCTGCAGCACCTGACCGTAACCTGCCTGCCCTCCTACTGGAAGGTCATGGTGAGCGAGGCACCCCGCGTCTTCCATGCCGGGGACTGCGGGATGCACCACAAGAAGTCCGTGTGCATGCCGTCCAGCCAAAAGACCAAGATAGATACCATTCTACAGAGCAGCAGCAATCAGCTGTTCCCCAAGAACCTGCTGATTACTAAGAGACTTCCGGCTAACGGGGCAGGGGGGGTGGCGCCCCACGTGAAGAACGGCGGTTGGGGGGACATTAGGGACCATGAACTCTGCAAGAGCTACCCTCGATTACAGTGACCTTATTATAATTGTTAGGCCTATATCGTTACTATTCTCTTTTTTGCATCCTCTGAATTTAAGAAAAAGAAAGCCTTTTGAAAAGAATCTTCATGGAATATTTCTTCATATTGCCTGTTTTATCTGACTCTTCCAAATAAACAGTTTGTTGGGTTTGGGC

Function

GO:

id name namespace
GO:0009312 oligosaccharide biosynthetic process biological_process
GO:0005795 Golgi stack cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0008455 alpha-1,6-mannosylglycoprotein 2-beta-N-acetylglucosaminyltransferase activity molecular_function

KEGG:

id description
K00736 MGAT2; alpha-1,6-mannosyl-glycoprotein beta-1,2-N-acetylglucosaminyltransferase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU386914 lncRNA upstream 3203 30813598 ~ 30814599 (+) True G341909
TU386920 lncRNA upstream 12187 30805393 ~ 30805615 (+) True G341914
TU386918 lncRNA upstream 15108 30800295 ~ 30802694 (+) True G341912
TU386885 lncRNA upstream 63598 30753318 ~ 30754204 (+) True G341880
TU386883 lncRNA upstream 66056 30751084 ~ 30751746 (+) True G341878
TU386927 lncRNA downstream 2494 30825553 ~ 30826284 (+) True G341921
TU386928 lncRNA downstream 3491 30826550 ~ 30826954 (+) True G341922
TU386998 lncRNA downstream 131697 30954756 ~ 31012694 (+) True G341983
TU387000 lncRNA downstream 133026 30956085 ~ 31107772 (+) False G341985
TU387001 lncRNA downstream 133026 30956085 ~ 31080704 (+) True G341985
XR_002473325.2 mRNA upstream 20115 30796219 ~ 30797687 (+) True LOC110522479
XR_002473324.2 mRNA upstream 20118 30796219 ~ 30797684 (+) False LOC110522479
XM_021600897.2 mRNA upstream 860244 29952461 ~ 29957558 (+) True LOC110522472
XM_036976080.1 mRNA upstream 865675 29942176 ~ 29952127 (+) False LOC110522470
XM_036976090.1 mRNA downstream 346592 31169651 ~ 31182712 (+) False LOC110522488
XM_021600917.2 mRNA downstream 346631 31169690 ~ 31175097 (+) False LOC110522488
XM_021600916.2 mRNA downstream 352509 31175568 ~ 31182712 (+) True LOC110522488
XM_021600920.2 mRNA downstream 364167 31187226 ~ 31227364 (+) False ppp2r5cb
XM_021600919.2 mRNA downstream 364171 31187230 ~ 31227364 (+) False ppp2r5cb
TU384729 other upstream 1480863 29335369 ~ 29336939 (+) True G339928
TU384628 other upstream 1650806 29166518 ~ 29166996 (+) True G339830
TU384441 other upstream 1902263 28914599 ~ 28915539 (+) True G339693
TU384407 other upstream 1958647 28858716 ~ 28859155 (+) True G339660
TU381324 other upstream 3216246 27590852 ~ 27601556 (+) True LOC118964415
TU387608 other downstream 558767 31381826 ~ 31382749 (+) True G342538
TU387623 other downstream 594896 31417955 ~ 31419256 (+) False LOC110522493
TU387645 other downstream 628074 31451133 ~ 31451476 (+) True G342571
TU387844 other downstream 962806 31785865 ~ 31786206 (+) True G342707
TU389208 other downstream 1871927 32694986 ~ 32704371 (+) True G343958

Expression Profile