RNA id: TU381220


Basic Information

Item Value
RNA id TU381220
length 1708
lncRNA type intronic
GC content 0.48
exon number 4
gene id G336723
representative False

Chromosome Information

Item Value
chromosome id NC_048568.1
NCBI id CM023222.3
chromosome length 46841314
location 27327879 ~ 27371054 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

acacactttctacactgacacactctctctacactgacacactctctctacactgacacactctctctacacacacactttatacactgacacactctctctacactgacacactctctctacacacacactttctacactgacacactctctacactgacacactctctcgaaactgacacactctctctacactgacacactctctctacatacactctatctacactgacacactctctacactgacacaatCTCTACACGAAcagactctctacactgacacactctctacactgacacactctctacactgacagacTCTCTACACTgccactctctctacactgacattctctctacactgacacactctctacactgacacactctctacactgacacactctctacactgacactctctatacactgacacactctctacactgacacactctctacacgcactctctctacactgacacactctctacactgacacactctctacactgacacactctacactgacactctctctacactgacactctctatacactgacacacTCTCTACACTGACACAATCTCTACACGAAcagactctctacactgacacactctctacattgacacactctctacactgacaccctctctacacacactctctctacactgacaccctctctacacacactctctctacactgacacacactctcacacactctctctacactgacacactctctacacacactctctctacactgacacactctctacactgacactctctctacactgacaccctctctacacacactctctctacactgacacaccccctctacactgacacactctctctacaatgacacactctctacactgacactctctctacactgacacactctctctacactgacacactctctctacactgacacactctctacactgacacactctctacactgacacactctctctacaccgacactctctctacactgacacactctctacacacactctttacactgacacactctctacactgacagactctctacactgacacactctctacaccgacacactctctacactgacacactctctacaccgacacactctctacaccgacacactctctacactgacacactctctctacactgacacactctacaccgacacactctctacactgacacactctctacactgaaacactctctacaccgacacactctctacactgacacactctctacactgacactctctctacactgacactctctctacaccgacacactctctacactgacacactctctctacactgacacactctctacaccgacacactctctacactgacacactctctacactgacacactctctacaccgacacactctctacaccgacacactctctacaccgacacactctctacaccgacacactctctacaccgacacactctctacactgccactctctctacactgacacactctctgcactgacacactctctacactgccaatctctctacactgacacactctctacactgacacactctctacactgacagactctctacactgacacactctctacactgacactctctctacactgacactctctctacaccgacacactctctacactgacaga

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU381197 lncRNA upstream 21940 27302672 ~ 27305939 (+) True G336709
TU381193 lncRNA upstream 29802 27296546 ~ 27298077 (+) True G336705
TU381134 lncRNA upstream 114625 27206829 ~ 27213254 (+) True G336650
TU381026 lncRNA upstream 282186 27044702 ~ 27045693 (+) True G336550
TU380995 lncRNA upstream 349480 26978187 ~ 26978399 (+) True G336519
TU381228 lncRNA downstream 2620 27334124 ~ 27340999 (+) True G336724
TU381230 lncRNA downstream 3160 27334664 ~ 27336220 (+) True G336725
TU381234 lncRNA downstream 4814 27336318 ~ 27340011 (+) True G336727
TU381224 lncRNA downstream 18155 27349659 ~ 27371054 (+) True G336723
TU381251 lncRNA downstream 63871 27395375 ~ 27437051 (+) True G336742
XM_021600692.2 mRNA upstream 132528 27186465 ~ 27195351 (+) True tcp1
XM_036976025.1 mRNA upstream 142430 27054628 ~ 27185449 (+) False LOC110522355
XM_036976027.1 mRNA upstream 142430 27099975 ~ 27185449 (+) False LOC110522355
XM_036976026.1 mRNA upstream 142430 27116411 ~ 27185449 (+) False LOC110522355
XM_036976024.1 mRNA upstream 323260 26998545 ~ 27004619 (+) True LOC110522356
XM_036976031.1 mRNA downstream 70593 27402097 ~ 27521982 (+) False LOC110522432
XM_036976030.1 mRNA downstream 70593 27402097 ~ 27523782 (+) False LOC110522432
XM_036976032.1 mRNA downstream 70593 27402097 ~ 27523782 (+) False LOC110522432
XM_036976040.1 mRNA downstream 70593 27402097 ~ 27523782 (+) False LOC110522432
XM_036976041.1 mRNA downstream 70593 27402097 ~ 27523782 (+) False LOC110522432
TU381040 other upstream 142909 27176381 ~ 27184970 (+) True LOC110522355
TU380919 other upstream 433042 26893135 ~ 26894837 (+) False G336464
TU381324 other downstream 259348 27590852 ~ 27601556 (+) True LOC118964415
TU384407 other downstream 1527212 28858716 ~ 28859155 (+) True G339660
TU384441 other downstream 1583095 28914599 ~ 28915539 (+) True G339693
TU384628 other downstream 1835014 29166518 ~ 29166996 (+) True G339830
TU384729 other downstream 2003865 29335369 ~ 29336939 (+) True G339928

Expression Profile