RNA id: TU385008


Basic Information

Item Value
RNA id TU385008
length 4780
lncRNA type antisense_over
GC content 0.43
exon number 4
gene id G340155
representative True

Chromosome Information

Item Value
chromosome id NC_048568.1
NCBI id CM023222.3
chromosome length 46841314
location 29798259 ~ 29803141 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGTGCCATTTGCTTGCTTTGGAACCAAAATAACCATCAGACAACCAAGAGTCAACCAATCCACCTTacagcattaaaaaaaaaaactaataatTTATTTCTGTGTACTATTCCCACATTAAATAAAAGATGTCGTTGGACAGATTGAAatcaaagagacagagaaagaggggcaggGGAACAAAACTCTGACATGCAAAAATACCGTTCTCTCTTCCCTTACCACACCTTACAGATCACAGGGGTCCAGGGCTAGTCACTACAAAAAACAGAGACCCCCTTTAGctggtcctgggggggggggcacagtgTGTGGGGTCCCCAAGTGGAGTGGTAAGAAGAGAGTAGATGCCCACTGAGCTAAGGTCAGTTTGCATCCCCCATCCGTAATGGTGAAGGTTAGGATTTGGAAggggtaaactgatcctagatcggtGTACCAAAATAGAAAATTCTAGCCAGAGCAAGAAACCAACTGGAATATCTAATAAAAAGCTTGACAACTCTTCCTCTCGTACAATGAGATGGGAGAAGAGTGGTTGGTCTCTGGGGTGAATGGTAGCTAGGCAACCAGTGGGATGGTGGTCCTCCAAGACCAGTTTAAGTAGCCTTGTCATGTTCTTAGACCCTAAACTCTGAAATGGCAAGACAACTTTTGATTTCTCTGTAGTGAAGACCATTCATTGACTTACTTTGAAGCCACAAGGGATGGGAAGGTATCAGCTAACATGGATGCCAGTCTGTTTCTTCTTTAGCTCACTCCTTTGTCAAAACAGACCAGAGCCATAGATATACATTAAATAGATGTCAATGTCTTTTGAAATCACACCAGAATCTGGCCACAAACAGACTGACGAGGAAGCCCTTCAACTGGGGTGCATTCAATGAGGTGCAAAGTTAAGAACAATGCAGCTAGAAAGATTTATATCTAACAGGACACCCTCATGAACAGACCTCTGGTGTAGATGGTCAAACGGAGCTGTCTAGCCTAACATGGCAGGCAATAATGTCCATGGTCCCTACTGGCACTGCCAGGGGTTCACACTTTTAAAAACTAGGGAAGAAATAAAGACGTTCTATGAGAATGAGGAAAGCGGGTTGGACCAAAACAAAGACCAATTTAATTTGAAATGGGACAGGATCCCCCTCACACCTCTAGACTGAAGCAGGATCAGAGTGATGTCAGAAAGAGTCAAGATTCAACAGGAAGTGTATCTGCACAGGGAGCCAAATGGAAGTCTTCCCAGTGAATGGAACAGAGTGCCATTGGAACAGTTCAAAGCAGTATGGCTTTggaacagctagcctagctcccATCTGTGCTTCCGGATCTGATGACATCGTTGCTGTCCAATCCTTCATTTTTATTCTAGTCCTAATAGTCTGGATGGGTGAAAATAAATTAGCAGAGAAAAGAAACAAAAAACCTAACTAATCAATCCCTCCAAAAACACAATACACAAAAAAAGATGCCCTCAGATGTCAAATGAAGAGCGCAAACACTCTGTATACAAATcgtcaataaaaaaaacaaaaggtCATCTGATCTGTTTTCAaacgcactcacacacatatactaTAACCACCCACACAGCAGCCTGTGTGTAAAGTATCTGTTGACATCCCTTCTCACTTCCTATTCTGCAATGTTAGCCGGTTGAAGAGATGTTGAGTAACAGCTCCTAACTGTTTGCATCTGTTTTATTAAAGCTGCaaactctgaaataacagctGCTAAAACTTTACAGAGATGCAGACACTGAGTAAACCTGGCCCATAATGTGTTGTGTATGCTAGTGTACACCTCTTATAGTTGCTCTCTCAGCCTATGGGACTTCATCACAGCTCAGCAGTACTGTACATTAGTGTCTCTGCTAGACAAGGAGCAGATCTTTAgtaactactaccaccaccattactactactaccaccaccaccaccacaactactaccaccactgccattactactaccaccactgccattactactactaccaccaccaccattactactactaccaccaccaccattactactactaccaccaccaccacaactactaccaccactgccattactactaccaccaccactgccattactactaccaccaccgtcattactaatactactacgaccaccaccaccgccattactactaccaccaccaccagcattactaccaccaccgccataactactactaccaccaccactgccgccattactactactaccaccaccaccaccattactactaccaccgccattactactactaccaccgccaccattaccactactaccaccatcattactactactactaccaccaccattactactactaccaccatcattactactactaccaccgccaccattaccactactaccaccatcattactactactactactaccgccattactactactaccaccgccattactactactaccaccgccattactactactaccaccgccattactactactaccaccatcattactactactactaccgccattactactactaccaccgccattactactactaccaccgccattactactactaccaccgccattactactactaccaccgccaccattaccactactaccaccatcattactactactactaccaccaccattactactactaccaccatcattactactactaccaccgccaccattaccactactaccaccatcattactactactactaccgccattactactacaaccaccacttcAACCaccattattactactactaccaccaacaccaccattactactacaaccaccactattaccaccaccaccttctatacctagctcaTGGTGTCCCTGTGTCTTTACTATACTTCAGGGTTATCTAGAGTTTGAAATAACCGATTTTACACCATcagtcaaaacacacacagccgACCTTTGTTAATTTACTCTGAAAaagaaaatcatatttttttaattcatttttttAGACAAAAAGCAGCCACAAACACATATTTTCTTTGCCATGATTGGAGTTGATAGGAACTGCCTGGTGTGTCTGTCTTTCCCAGACAGAGGAGCTCTCAAATGTTACCGGAGTGTGTGCTGCATCAGAGTAGGGCCCCTATAAAGTGTACTCTAGGCTTGGCCACTAAGGGGAGTGAGTGTACGAGTGTATAATACACAATCTAAATAAACTCAGAGAGCAAACAGGAAATAAGTAAACTGCAAACAATACCTTTGCCCTCCTTTACCAGAggtcaacacactgactcaaacacacacagagcgaaGCCAACAGGAATCCAACATATTTAATAACACTATTACTCCAGCCTGACACTTTGCCATACTGAAACAGGACTCCAGTGCTCTGCATGTTGTTAATTCATAGACAACTGTGATGATTGAAAGACAGAGGGGTGATTGGAAAAAATAGTTTCCAAGTTAGGAGGAATTTGAATGAACAACCTGCAATAGGGAAATAGTTTCCGAGCCCAAAAAAACTTCTCCTTTGTCAATAATTATTTATCTTTCTCAGGAGATTTTTGAGCAATGTTCCAGTGGCTGGCAGTGCATTTTGGGAAAATTAGCTTTGATCTGCAAAAAGGGCCAACACAAGTGCCCAATCTCAAATAGGCCCCTCATTCTTACCCCTCTAAGCACTTACCAAGTGTATCTGAAATGATTGAATAGGTATTACTAAAATGGAAATAGGTCCACCTTTCCCTCTGACAGGCAGGAAGAATTTGcaccatattgcttacacctatccaaacctttcagatctacacaagtgccTAGGAGTTAGGACTATGGGTCTGTTTGGAACTGGGCAATGTTCCGAGTGTTAATCAACACACTCATACCACCACTCTTGTTAAAATAAATGCATGCATATCTTTACAGGCTCCAGCTCTTGGTCTGGGGCACGGGGTGAAAACTGAGCAGCAAGCAGCTGGCGTGTTCGTCTCACAACGTAGGGTTAATGAAAACACAGACAGGGGGAGAAAAGCACACTAACACGCACAACTCATGATTCCCACCAAGCATGCGTGCGCACACACCCATCCACTACATTACTTCACATCCTTTACTTCACGTCCCTTACACATGTACACAATACCCTAAACACTTCCTTTTCCAAACCCCTAGGGAAAACACACACtctcacgaacacacacacaatagcttTTCCAACCCCCTGTTGAATCATGAGATTAAAAAATATACACAAAAAATAAACTCCACAAATATTTCCTTCGAATCTGTCGTTTTCCCACCTTCTTCCATATTTTCACCCTGTGTTATTATTCTTCTTCTGTTTTCCTGTGTTCCAGTGGGTGATTTTGCGTGATGCATCGCCCTCCGGGGGTTTGTGGGTTCACCCTCGACATCATGCCTTAGATACTGCTCCGTTGGAAGGGGGGGGGCAATGTTCTGAGGTTAAAGGTCACCAGACCACATCACACACTCCTCTTCCTTCCCCCTCTAACAGGATCCTACAGCTAACAGGGCAAGGGCCTCTTCATTAAAACATTGTGggatttctgtctgtctgtccagtttAGCCTTGAGCTGTTTTCCAAGATGTCAAGGATCAAAAAAGGGAGGgttgtatgtactgtgtgtgtactgtgtatgagtagtgtgcatgtgcgtgtgtctATGTATATGCAAATGTAGGTGAATCTATGCTTGTGGGTGtatgacaatgtgtgtgtgcatatgggtGTATGactgtgcgtgggtgtgtgtgt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU385004 lncRNA upstream 27816 29769806 ~ 29770443 (+) True G340153
TU384974 lncRNA upstream 59858 29737993 ~ 29738401 (+) True G340125
TU384954 lncRNA upstream 112653 29685352 ~ 29685606 (+) True G340107
TU384950 lncRNA upstream 114046 29683820 ~ 29684213 (+) True G340106
TU384922 lncRNA upstream 150475 29647462 ~ 29647784 (+) True G340081
TU385038 lncRNA downstream 23130 29826271 ~ 29826549 (+) True G340182
TU385050 lncRNA downstream 48099 29851240 ~ 29851549 (+) True G340193
TU385060 lncRNA downstream 55957 29859098 ~ 29890519 (+) True G340201
TU385078 lncRNA downstream 80662 29883803 ~ 29887768 (+) True G340219
TU385084 lncRNA downstream 90607 29893748 ~ 29894413 (+) True G340225
XM_021600884.2 mRNA upstream 119 29787568 ~ 29798140 (+) True LOC110522463
XM_021600882.2 mRNA upstream 71058 29717778 ~ 29727201 (+) True LOC110522461
XM_021600876.2 mRNA upstream 91458 29686032 ~ 29706801 (+) True LOC110522458
XM_021600865.2 mRNA upstream 157142 29633896 ~ 29641117 (+) True LOC110522456
XM_021600869.2 mRNA upstream 157787 29633896 ~ 29640472 (+) False LOC110522456
XM_036976075.1 mRNA downstream 35228 29838369 ~ 29842910 (+) False LOC110522467
XM_021600887.2 mRNA downstream 36725 29839866 ~ 29842910 (+) True LOC110522467
XM_036976080.1 mRNA downstream 139035 29942176 ~ 29952127 (+) False LOC110522470
XM_021600894.2 mRNA downstream 139036 29942177 ~ 29952127 (+) True LOC110522470
XM_021600897.2 mRNA downstream 149320 29952461 ~ 29957558 (+) True LOC110522472
TU384729 other upstream 461320 29335369 ~ 29336939 (+) True G339928
TU384628 other upstream 631263 29166518 ~ 29166996 (+) True G339830
TU384441 other upstream 882720 28914599 ~ 28915539 (+) True G339693
TU384407 other upstream 939104 28858716 ~ 28859155 (+) True G339660
TU381324 other upstream 2196703 27590852 ~ 27601556 (+) True LOC118964415
TU387608 other downstream 1578685 31381826 ~ 31382749 (+) True G342538
TU387623 other downstream 1614814 31417955 ~ 31419256 (+) False LOC110522493
TU387645 other downstream 1647992 31451133 ~ 31451476 (+) True G342571
TU387844 other downstream 1982724 31785865 ~ 31786206 (+) True G342707
TU389208 other downstream 2891845 32694986 ~ 32704371 (+) True G343958

Expression Profile