RNA id: TU385092


Basic Information

Item Value
RNA id TU385092
length 3889
lncRNA type intronic
GC content 0.41
exon number 1
gene id G340227
representative True

Chromosome Information

Item Value
chromosome id NC_048568.1
NCBI id CM023222.3
chromosome length 46841314
location 29903591 ~ 29907479 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gggaaagcgtccgtgcgtttggacaattaatagacactgcagtaaattaatcagaataaaaacatctgtcttgtccaggaccggaGTCTACACAGACTGGCGCGCTATTGCCAATCAGAGCAACAGTAGGCCTTTatacaaacaagccatttgccacatgGGCCTGCTAACATTCGCTTTGAACTGGTCTTTACAGGAAGTTGCAACAGCgcaactttagatcattagaacgcattcgccaaaagccacctgaatgaatttctgcaaatatgtaaacaccacgggagtcctcttacattttgAAACTtattctgcagcttgcctgccaatgcatgcttgtcccaaccaagcacccaagctaactggctaaagttggctagctttctagctagccaactacttccagacacaaatgagagaacaccttaTTTTACTCgccgtagcagagctggttagccTGTTAACATGTTTCTAGAGCATTCCTGATTCACTATTACTTTTTTTGTCTACGTTTACACCGGTCACATTCAGCTGCTGTTGCACATTCGTAAATTCTTCAGTTGTTCTGCGCACTgacacactcagatgagagtgctctgaatcGGAGTAGATAGCATATCTTTTGCATTTGCAAATTCATTCTGGCTAACTGGATAACAATGATTtaagttcttgctagctaaccaaatgacacctgcatctctagctgtgtatagcTACCGAAAAACGATATGAGGGGAAAAAGTCAGTCACTAACCCACTTCTCCAATGGCATGGCATCCTCCTAGCAGTTAGCTAGCATTAGGCTCTGTGTTTTTATcttgctacataaatagataccCTAGCCTCTATTAGCCACATTATGACTGACTtatgatcattgcccttgctagtttgattatattgacattcccagccttagttacattcgtcCGTTTTTGTCCAGAATATTGAGTAAGTGCAACccgaatggaggcagcaaacaatgtaccagtccagctgtgatttacaacctcaTAGCAATATTTTTAGGACTACCatgaaatgtattggtgaatcatattaatcatgcattgaactgcatccatctattctgccaacaatgcttAGTTTATGTCATGGAACGTTGAGTCTAATATAACCtgtttttaaaacctcttataaagttggttttgtagcataaactgggaattgtATATTTTTTACTGATATgattgtttgtttcatatctgcaaagtagttaaaatgcTGTCACTTCCACTTTAAACTTTAGATCACcggttactttttttttttttttgcaatgggaagtaatagttGTACATTTCGATTGGGAAATGCTCAAcggttgtgtttttgtattcttatgaTTGGCACCTAGTGGCTTATTATGTCCGAGGTTATGGACCGCCTATCCTTTAACATCATGTTGTATGTTACTGCTGTCTTTCCATtggccctatgcagtggtgtagggaaagggggatacctagtcagttgtacaactgaatgcattcacctGCAATGTGTCTTccgcttttaacccaacccctctgaatcagaggcgCGGAGGGCtgcctctctgggatatgtgggacggtagcgtcccacctggccaacatccagtgaaaatgcagcgcgccaaattcaaataaattactataaaaattaaactttgatgaaatcacacattcaatataccaaattaaagctacacttgttgtgaatccagccaacgtgtcagatttaaaaaatgcttcatggtgaaagcaaacaatgctattatctgaggatagcaccccagtaaacagagagaaaagcatatttcaaccctgcaggcgcgacacaaaacgcagaaataaaaatataattcatgccttacctttgacgagcttcttctgttggcactccaatatgtcccataaacatcacaaatggtccttttgttcgattaattccatcgatatatatccaaaatgtccatttatttggcgcgtttgatccagaaaaacaccggtaccaacttgcgcaacgtgactacaaaatatctcaaaagttacctgtaagcaTTGTCTAAACATTTCaaattacttttgtaatacaactttaggtattttttaacgtaaataatcaataaaattgaagacgggatatactgtgttcaataccgaaggaaaacaaagtggagcgtgcTTTCAGGTCATGCGCCTCTAACAAAGAGTACACTTCCCTCGAGCCTCATTCTGAACAGtgttacttcttcatttctcaaaggaaaaacctcaaccaatttctaaagactgctgacatccagtggaagcgataggaactacAGGAAAGTggattagaaatctggattcccaatgaaaacccattgaaaagagtgaaCTCAAAACAAATTGAacggtttgtcctcggggtttcgcctgccaaataagttctgttatactcacagacatgattgaaacagttttagaaacttcagagtgtatgcatatcttatcttctgggtgtgagtagcaggccgtttactttggacacacttttcatccggacatgaaaatactgcccccggtcccaaagaagttaatcgACAGCCACGTCGTCAGCACCCGgagaacattgggttaactgccttgctcaggggcagaatgacagattttttaccttgtcattaagtaaccttttggttactggcccaacgcgccAACCTGCCAggctggagaagtgggtatacacagattttgccaaaaagttcccaATTGGCCTGCCCAGCGAAGGAAAGGCACCCTGTGTGAGTTTTTCCAGATTATTTTTTTAATGCAAAAATTTGAtggtccacaacaatgcttaaatcacatcaATTTGATTTGGTGGGCCTGttagggcctggctccccagtggatgggcctcTGTCCACCGAGGCCCATCCATGTCTACACCCCTGATGCAAACAGTGCATGATGACAATTGCACATCACAAATAGCCTACTTACCAACACTTTGGACTAAACTTTTTAaatacctggtttgcatacccattgttgcCTTAGTTAACATTTACTGGTAGATATCTTAAATTGTAAATGTCTTTCCGACCCCACCAGCTACCAATGTCATTCTTCTGTGAGTTGCTCCATGCCAAAACCAGTTGAGCGCTGCACTTTCTTGCTGCCTGCAGATGATATTCTGCTGAAACTAGGCTGTGTGCGGCGTGCATGTGAATATATTTCACGTGCTTTGCGATTGTGTAGACTATGTTGGGCAtgactactctactgtactacatACTTGATAAGTagtatacctccactacactactttggtACGCATCAGTAGGGATTAATAAGTGAGTATACACAATGCCCATTGAAAACAAAGTGGGTATACggctccactacaccactggccctttgtgttttacaaaaagtACACTGTCCTACATGAGTGCGCTGGTATTATggttgctgtcctttcagaatcaccaacctgtcacacactgaaggcctattaGGTTCGCCACTGAGCAAACATGTCTATAATAGATATTAAGGCTGTTAAGAGACTGTATTAATGTTACAAGAAAGgagtgtatatatttggcctggCGAAGCGGTTTTATGCGCTAATGGAATGGAAGCTAATAAGAGTTTTTTTTACTCTGCTGGTCTCGGGAAGAAATTAGTACAAATGTATTCAAATCATAtctaattgtattagtcacatgcgccgaggtgtagaccatacagtgaaatgcttacttacgagtcccTAACCAACActgcagttaaaaaaatatgaataagaaataaaagcaacaagtaattaaagagcagcagtaaaataatagcGAGACTTTATACGGGGGGTACGggtagagtcaatgtgc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU385082 lncRNA upstream 5147 29898125 ~ 29898444 (+) True G340223
TU385083 lncRNA upstream 7415 29895792 ~ 29896176 (+) True G340224
TU385084 lncRNA upstream 9178 29893748 ~ 29894413 (+) True G340225
TU385060 lncRNA upstream 13072 29859098 ~ 29890519 (+) True G340201
TU385078 lncRNA upstream 15823 29883803 ~ 29887768 (+) True G340219
TU385087 lncRNA downstream 3159 29910638 ~ 29912698 (+) False G340226
TU385085 lncRNA downstream 4582 29912061 ~ 29914162 (+) False G340226
TU385089 lncRNA downstream 6243 29913722 ~ 29914162 (+) False G340226
TU385091 lncRNA downstream 6243 29913722 ~ 29914232 (+) False G340226
TU385086 lncRNA downstream 6389 29913868 ~ 29914162 (+) False G340226
XM_036976075.1 mRNA upstream 60681 29838369 ~ 29842910 (+) False LOC110522467
XM_021600887.2 mRNA upstream 60681 29839866 ~ 29842910 (+) True LOC110522467
XM_021600884.2 mRNA upstream 105451 29787568 ~ 29798140 (+) True LOC110522463
XM_021600882.2 mRNA upstream 176390 29717778 ~ 29727201 (+) True LOC110522461
XM_021600876.2 mRNA upstream 196790 29686032 ~ 29706801 (+) True LOC110522458
XM_036976080.1 mRNA downstream 34697 29942176 ~ 29952127 (+) False LOC110522470
XM_021600894.2 mRNA downstream 34698 29942177 ~ 29952127 (+) True LOC110522470
XM_021600897.2 mRNA downstream 44982 29952461 ~ 29957558 (+) True LOC110522472
XR_002473324.2 mRNA downstream 888740 30796219 ~ 30797684 (+) False LOC110522479
XR_002473325.2 mRNA downstream 888740 30796219 ~ 30797687 (+) True LOC110522479
TU384729 other upstream 566652 29335369 ~ 29336939 (+) True G339928
TU384628 other upstream 736595 29166518 ~ 29166996 (+) True G339830
TU384441 other upstream 988052 28914599 ~ 28915539 (+) True G339693
TU384407 other upstream 1044436 28858716 ~ 28859155 (+) True G339660
TU381324 other upstream 2302035 27590852 ~ 27601556 (+) True LOC118964415
TU387608 other downstream 1474347 31381826 ~ 31382749 (+) True G342538
TU387623 other downstream 1510476 31417955 ~ 31419256 (+) False LOC110522493
TU387645 other downstream 1543654 31451133 ~ 31451476 (+) True G342571
TU387844 other downstream 1878386 31785865 ~ 31786206 (+) True G342707
TU389208 other downstream 2787507 32694986 ~ 32704371 (+) True G343958

Expression Profile