RNA id: TU385087


Basic Information

Item Value
RNA id TU385087
length 2061
lncRNA type intronic
GC content 0.44
exon number 1
gene id G340226
representative False

Chromosome Information

Item Value
chromosome id NC_048568.1
NCBI id CM023222.3
chromosome length 46841314
location 29910638 ~ 29914232 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ccggGTTAGagccccgctccttgaaagcggcaactctagcctttagctcagtgcggatgttgcctgtaatccatggcttctggttggggtatgtacgtacggtcactgtggggaccacGTCATCGAtaacacttattgatgaagccaatgactgatgtggtgtactcctcaatgtcattgaaggaatcctggaacatattccagtctgtgctagcaaaacagtcctatagctTAGCAtcagcttcatctgaccacttttttttattgatcgagtcactggtgcttcctgcttaaatttttgcttgtaagcaggaatcaggaggatagaattatggtcagatttgccaaatggagggtgagggagagctttgtatgcatctctgtgtgtgaagtaaaTGTGGTTCAGagtgttttccctctggtttcacatttaacatgctgatagaaatttggtaagaaagatttaagtttccctgcgttaaagtccccggctactaggagcaaAAAAGAGGAATCTgacagtccgtggtgagtaatagCAGTTCttatgtccagaagttattttcggtcataagagacagtagcagcaacattatgtacaataaGTAAAAAAACAAGTTACACACAATGCAAAGAAATgaacaaaaaacacaattggttaggaatatgtaaaacgtcagccttgTTCTCCATAGCCCTCTTGTCGACACTGAGACAAGACCGGGACACCCAATATGTGGTCTTGAGACCGGACTCGAGACGGTACTACTTAACAGCTTAAAACCAGTGTAAtctctgtctggtcttggtcagtacctgTGCTGttgcattctgtatgttttgcagtataccaatggctttcttgagtagaccagacaggagagcattacagtagtcaagcttggttgtaataaaagcatggatgtgTCTCTCTGTTATCAGCTTGAGAGAGAAACGGATGCACCTAGGCTAGTGAAAATGTACACATGATGTCTGATAGCGACGAGGAGAGGGTTCTCTCAAGATTATACTGCAGCTAGTTATCCAATatagagaacagagaagaacattcAGCATTTCATAGAACATCATTGGGTCTGGGGTGTGTGACGAATATTgcaagagtgttgggtcagtaaccaaacggttactggatcaaatccccgagccagcaaggtggaaaaatctgccgttctgccattgaacaaggtagttaaaccccaacaacaactgctccctggaCGGCGATGTCGATTAAGATAGCCcctcgcacctctctgattctgagaggttgggttaaacgcataagacacatttcggtttgaatgcattcagtttagcaactgactaggtatcccctttccctcgCCCTAAAtcattacagtgtaattacaggCTTATTCTCACTACAAAAGAGAGGAAGGAGTATTCTGATAGTCTTCTGCAGAAATGCTGAGTACCTTGTGTCAGCCATggctgttttctctctgtcactgtctgtccttaAGCTACATCCAGTTAATCATTATTCAAGTGCCCATGATAGTCAGCAGCATTTGTATGGATAGCATTGTCACGGGGGCTAGGTGGAGATTTGACCATAACACTAACACTTATCTACAATTACTAGACAATCTACAATTACTAGAGCTAGTagtcagtttattttattttcaactGAGTGGAACTGCCATCTCCTTACATATTTTTTGCACTTTTTTGAGACAGTACTGAAACGAGAGGGAAAGACAGTCCAGTGTGAGAAGGGAGGATGCAAGGGTTGAACCCCGGTCTCTGGAGGGGGAAAGCATAATGTGGTTACAGCCGGGAGCGTTAGTTAACACAGGACTGtatcaacccctagcccctaccctTATGTTGTGTTATCTGTGTAGGTCTGAGAGCATTGGAGAGGTACATGCAATATGCCAGAAGTTCCACCCTGGCCTATCAGAAGACAAGTGGTAGGCTAGATATATTAATCTAACGTAGCATGTGTAAAAAGACGCCTGAACGGAGTCCCCACACTCATTTTTCAAGGGAAACGGAAGTTAGGTTGAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU385092 lncRNA upstream 3159 29903591 ~ 29907479 (+) True G340227
TU385082 lncRNA upstream 12194 29898125 ~ 29898444 (+) True G340223
TU385083 lncRNA upstream 14462 29895792 ~ 29896176 (+) True G340224
TU385084 lncRNA upstream 16225 29893748 ~ 29894413 (+) True G340225
TU385060 lncRNA upstream 20119 29859098 ~ 29890519 (+) True G340201
TU385089 lncRNA downstream 1024 29913722 ~ 29914162 (+) False G340226
TU385091 lncRNA downstream 1024 29913722 ~ 29914232 (+) False G340226
TU385086 lncRNA downstream 1170 29913868 ~ 29914162 (+) False G340226
TU385090 lncRNA downstream 1170 29913868 ~ 29914232 (+) True G340226
TU385103 lncRNA downstream 14630 29927328 ~ 29927607 (+) True G340238
XM_036976075.1 mRNA upstream 67728 29838369 ~ 29842910 (+) False LOC110522467
XM_021600887.2 mRNA upstream 67728 29839866 ~ 29842910 (+) True LOC110522467
XM_021600884.2 mRNA upstream 112498 29787568 ~ 29798140 (+) True LOC110522463
XM_021600882.2 mRNA upstream 183437 29717778 ~ 29727201 (+) True LOC110522461
XM_021600876.2 mRNA upstream 203837 29686032 ~ 29706801 (+) True LOC110522458
XM_036976080.1 mRNA downstream 29478 29942176 ~ 29952127 (+) False LOC110522470
XM_021600894.2 mRNA downstream 29479 29942177 ~ 29952127 (+) True LOC110522470
XM_021600897.2 mRNA downstream 39763 29952461 ~ 29957558 (+) True LOC110522472
XR_002473324.2 mRNA downstream 883521 30796219 ~ 30797684 (+) False LOC110522479
XR_002473325.2 mRNA downstream 883521 30796219 ~ 30797687 (+) True LOC110522479
TU384729 other upstream 573699 29335369 ~ 29336939 (+) True G339928
TU384628 other upstream 743642 29166518 ~ 29166996 (+) True G339830
TU384441 other upstream 995099 28914599 ~ 28915539 (+) True G339693
TU384407 other upstream 1051483 28858716 ~ 28859155 (+) True G339660
TU381324 other upstream 2309082 27590852 ~ 27601556 (+) True LOC118964415
TU387608 other downstream 1469128 31381826 ~ 31382749 (+) True G342538
TU387623 other downstream 1505257 31417955 ~ 31419256 (+) False LOC110522493
TU387645 other downstream 1538435 31451133 ~ 31451476 (+) True G342571
TU387844 other downstream 1873167 31785865 ~ 31786206 (+) True G342707
TU389208 other downstream 2782288 32694986 ~ 32704371 (+) True G343958

Expression Profile