RNA id: TCONS_00002431


Basic Information

Item Value
RNA id TCONS_00002431
length 3998
RNA type mRNA
GC content 0.43
exon number 17
gene id XLOC_001478
representative True

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 46666696 ~ 46706639 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CTCCGCACGTCGGTCGGGACTacaggcgcacacacatacacacagagccATGGCCGAAAACGCCGGCTTGGAAAACCATCGCATTAAGAGCTTCAAAAACAAGGGGCGAGATGTGGAGACGATGCGAAGACATCGTAATGAAGTGACAGTAGAACTGAGAAAGAACAAAAGAGACGAGCATCTCCTGAAGAAAAGAAATGTTCCACAAGAAGAGAGTCTGGAGGACTCTGACGTGGACTCTGACTTTAAAGGGCAAAATGTAACGCTAGATGCCATCTTACAGAACGCCACCAGTGACAATGCAGTGGTGCAGCTCAGTGCAGTGCAAGCAGCCAGAAAATTGCTCTCAAGTGACAGAAATCCCCCTATAGACGACTTGATAAAATGTGGAATCCTTCCAATCCTAGTCAAATGCCTGGAGAGGGATGACAATCCTTCATTGCAGTTTGAAGCTGCCTGGGCTTTGACTAACATTGCATCAGGGACGTCTGCACAGACACAGGCAGTGGTCAAATCCAATGCTGTCCCATTGTTTTTGAGACTTCTGCACTCTCCTCATCAGAATGTGTGTGAGCAGGCCGTGTGGGCGCTGGGAAACATCATTGGTGATGGACCTCAGTGTAGAGATTACGTCATCTCGCTCGGTGTGGTCAAACCTCTCTTGTCGTTTATTAATCCTTCCATCCCCATAACCTTCTTGAGAAACGTCACCTGGGTCATTGTCAACCTGTGCCGAAACAAAGACCCTCCACCACCCATGGAAACAGTACAAGAGATTCTTCCTGCCCTCTGTGTACTCATATATCATACAGATATAAATATTCTGGTAGACACAGTGTGGGCTCTGTCGTATCTGACAGATGGAGGTAACGAGCAGATTCAGATGGTAATAGACTCAGGTGTTGTCCCGTACCTTGTCCCACTGCTCAGCCACCAAGAGGTCAAAGTTCAGACTGCAGCGCTGAGAGCGGTGGGGAACATTGTAACCGGGACAGACGAGCAGACTCAGGTGGTGCTCAACTGTGATGTTCTTACTCACTTTTCCACCCTGCTCACACACCCCAAAGAGAAAATCAACAAGGAGGCGGTGTGGTTCCTGTCTAATATAACAGCAGGAAACCAGCAGCAGGTGCAGGCTGTAATAGATGCTGGTCTCATACCCATGATCATTCACCAGCTTGCCAAGgGTGATTTTGGGACACAGAAGGAGGCTGCATGGGCCATCAGCAACTTGACAATAAGTGGAAGAAAGGATCAGGTGGAGTACTTGGTGCAACAAAACGTGATCCCACCCTTCTGCAACCTGCTCTCGGTGAAAGATTCTCAGGTGGTCCAGGTGGTCCTCGACGGACTGAAAAACATCCTTATCATGGCCGGGGAGGAAGCCAGCACAATTGCTGAGATCATTGAAGAGTGTGGAGgatTGGAAAAAATCGAGAACCTCCAGCAGCATGAAAACGAGGACATCTATAAACTTGCATTTGAAATCATTGATCAGTACTTTTCAGGAGATGATATTGATGAAGACCCAAGTCTGATTCCCGAGGCCACCCAAGGAGGCACATTCAACTTCGATTCCTCCAACCTACAAGCCAAGGAGTTTAAGTTCTAGACAACATCTGGAGCGTCGAACTTAGGATTGGTGGGTTTCCCAGCTGCTCCTCAACACCCTGCCACCTACTGACCCATCACCTACCAACCACTCACTAACCAGACAAAACCAACCAGTCACCGTGCTCAGAAACAAtactctcactcactcacacagaaAAGAAATCGCACTGAAGGATCCGAGTACCCGCCTCGACGCCACTCAAAACACGGATGgatctaaaaaataaaactcaaaagAACAAGACTCATTACACTGCAGTtgccaaaaaacaaaagaaaaaactaacaaaaaaagatatatattttgctctttctttcacacacaaacacacacacacacacacataggtgaGCATGAACAATGATAGGAACTTCTGTTGTTGTACCAGCCATCATATCAGCCAAGGAAGATGAAGAAAGAGAAATTCCTGAAATTAAAAAGGCTTTCGGTTTCCAAGAAAGCCCTTCTCTGGAATGGTGGTGATTTTCGAGTCTCAGACAGACACCCAACTCGATACGTCCAGCCTCTACTGTGTTAAGCCATTTGGACCTTCTCCCTCATTCATCTGTGAACTAGCCTCCGATGGCTTATTCAAAGGAATATTGTTCAAGTGGGGGAAGGGAGCGTCTCTAAAATATGTGGTGTGCAAACAGAAACACTTTAATTATCACCACCAGTTCTTGCTTTCTTTTCTTCATCCTGAAATTATGGACAATACACTGAAGATACAGAAACTTGAATGGAGTAAATCTCCTCAGTCGAGCACCCTTGTTTTCAAAAGTTCTGCAGCGATAAGTGTCGTGGACATTCATTGTGCCGATCTTTTTTGGTTTGCAATGGCATAGGAGGATACGATCAATTTGGCCAGGACTTTTAAAGGGCCGCCCCAACCTTTGGAAGTTCTTCAAGATAACCTCAAGAGGTCTTTCTGCTTAACACGGGTGCTCTGGCAGCGCTCTTTGTTTCCTGGATTCATCTTCTCTTCTTCCTGTCTGTAATCATAGTAATAAGTTCATCGGGAGAACCCCAATCGTAACCGGTTGGAGGATGTTTTCACTAAATCAGTACATTTCAGCACTCGATAGTCAAGAAACTCTGCAACAGTGATTGGATTGtgaattctttttttgttttgatcaGTGGAGCTTCCGCTTTTGCAGTTTTTCCAGTCTTACGCATACACTTTTTTGGGTTTTTTCCcgttttattgcttaatgtaagtGGAGAGCGATGTTCGCTTAATTTTGACTATACAAGCAATGGGAAAAGGTGATCCATGACGTTTTTGTTTAGTTGGTTTTTAAATCCTATTTCACTTGCTGCAAAACCTAATCTTACcaactaaaataaaagtatatttctTGTTTAGGTATATAATGAGAAGCTACCACACTTAGGTCCACTAGACGTTGGGACGCTACAAAACAATAACAACGTTATGATTATCGATTTACAGCCAATAGgggtaattattattttctttcgtTTGCAATGGCAAATGATTGCCATTATTTGGAAAATGGGCTTTCTTACTGTTGTGACTGGAcgttttatttgttgttcttttttCCCCCTGTGCATTAACTTGTAAAGGGATGTATGAGAAAAAGAAATTTACATTTGGACTGAGGTAATTGTATTTGAGCGGCAAATACAGCAAGGAAGCTAAAGGCAGCCctgatgattttgtttttttgaatTCGCCATTTATTGTTGAACAAAATAAAGCAGGTTTGAAATTCATGAACTTATCTAGACATCTAGAAAACGAGCCACTTTAAAGACGTTTCGTCTTGTATCGGAAATGGATACAAGCTTATTGCTTGTTGCAAGATTTTTActtgctgaagaaaaaaaaaattaatctaaaaACGGCGACAGATCGCATTTTGGCCTCtgattgtttgtatgtttttataaattttagaACTGAATTTCTCTTTAAGGTGGCTCATCAGTATTTTTTTCAACTCTTGTGCATATTAAAGATAAAGAATGAGTTGAAATTCATTGTGCCTTTGTTTTTCATTTCGAAGCAACTAAAAAAAGAGGTTCATAATGCCTGCCACGTTGCATTGGAGCTGCTTATAATATGGGGTCTTCTGGGTGTCATATCTGGACTTTACAATGAGACGTTCTCTGGAGTAGAGTTATAATTCTATTTCAATTCTCCTCTAGTTTGCTGGCTGACTTGTAATTGATCCTCTAACTTTCATTCTGCTCCCTTCTCATTCTTGTTCACTATTCTCAGCTTGTCCCTGCCCCGCCCTCCCACCTCCTCCCATCCACCTTTCTATGGCAACACATCTTTCACTCATCACTCCCTCAGGACGTGCTTTATGTATCAATGAACCTAACCAAAATAAACGTGCTGTTAGCCATC

Function

GO:

id name namespace
GO:0006606 protein import into nucleus biological_process
GO:0006607 NLS-bearing protein import into nucleus biological_process
GO:0015031 protein transport biological_process
GO:0005634 nucleus cellular_component
GO:0005654 nucleoplasm cellular_component
GO:0005737 cytoplasm cellular_component
GO:0008139 nuclear localization sequence binding molecular_function
GO:0061608 nuclear import signal receptor activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030616-541 Predicted to enable nuclear import signal receptor activity and nuclear localization sequence binding activity. Predicted to be involved in NLS-bearing protein import into nucleus. Predicted to act upstream of or within protein import into nucleus. Predicted to be located in cytoplasm. Predicted to be active in nucleoplasm. Orthologous to human KPNA3 (karyopherin subunit alpha 3).

Ensembl:

ensembl_id ENSDART00000074519

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00002419 lncRNA downstream 390540 46271670 ~ 46276156 (-) False XLOC_001473
TCONS_00003470 lncRNA downstream 480845 46185218 ~ 46185851 (-) True XLOC_001471
TCONS_00003469 lncRNA downstream 826819 45838995 ~ 45839877 (-) True XLOC_001469
TCONS_00003468 lncRNA downstream 828706 45832775 ~ 45837990 (-) True XLOC_001468
TCONS_00003467 lncRNA downstream 966126 45696834 ~ 45700570 (-) True XLOC_001466
TCONS_00002433 lncRNA upstream 8567 46715206 ~ 46718313 (-) True XLOC_001479
TCONS_00003471 lncRNA upstream 15207 46721846 ~ 46738557 (-) False XLOC_001480
TCONS_00002973 lncRNA upstream 19169 46725808 ~ 46738598 (-) False XLOC_001480
TCONS_00003472 lncRNA upstream 43905 46750544 ~ 46757543 (-) False XLOC_001481
TCONS_00003473 lncRNA upstream 43905 46750544 ~ 46791555 (-) True XLOC_001481
TCONS_00002430 mRNA downstream 2699 46660213 ~ 46663997 (-) True XLOC_001477
TCONS_00002427 mRNA downstream 16655 46635236 ~ 46650041 (-) False XLOC_001476
TCONS_00002429 mRNA downstream 16674 46642522 ~ 46650022 (-) True XLOC_001476
TCONS_00002428 mRNA downstream 18509 46636263 ~ 46648187 (-) False XLOC_001476
TCONS_00002425 mRNA downstream 33730 46619197 ~ 46632966 (-) False XLOC_001475
TCONS_00002432 mRNA upstream 4008 46710647 ~ 46718353 (-) False XLOC_001479
TCONS_00002438 mRNA upstream 131210 46837849 ~ 46875493 (-) False XLOC_001483
TCONS_00002439 mRNA upstream 141905 46848544 ~ 46862190 (-) False XLOC_001483
TCONS_00002440 mRNA upstream 147438 46854077 ~ 46859398 (-) True XLOC_001483
TCONS_00002441 mRNA upstream 181394 46888033 ~ 46924801 (-) True XLOC_001484
TCONS_00002426 other downstream 35992 46627489 ~ 46630704 (-) True XLOC_001475
TCONS_00002410 other downstream 1003945 45655075 ~ 45662751 (-) True XLOC_001465
TCONS_00002392 other downstream 1349068 45316209 ~ 45317628 (-) True XLOC_001459
TCONS_00002327 other downstream 2941478 43719949 ~ 43725218 (-) False XLOC_001419
TCONS_00002319 other downstream 3691821 42974760 ~ 42974875 (-) True XLOC_001415
TCONS_00002434 other upstream 15740 46722379 ~ 46722518 (-) False XLOC_001480
TCONS_00002435 other upstream 15983 46722622 ~ 46722705 (-) False XLOC_001480
TCONS_00002436 other upstream 19169 46725808 ~ 46743552 (-) True XLOC_001480
TCONS_00002442 other upstream 238388 46945027 ~ 46945143 (-) True XLOC_001486
TCONS_00002449 other upstream 312372 47019011 ~ 47071948 (-) False XLOC_001489

Expression Profile

//

Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000119_01742950_01760617.mRNA True 792 mRNA 0.48 10 CI01000119 1742950 ~ 1760617 (+)
bowfin (Amia calva) TU87100 True 2420 lncRNA 0.36 2 CM030128.1 11719318 ~ 11722767 (+)