RNA id: LOC110524936


Basic Information

Item Value
RNA id LOC110524936
length 549
RNA type mRNA
GC content 0.49
exon number 3
gene id LOC110524936
representative True

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 5577014 ~ 5577940 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GATGGGGGGTCAGCTGTCGAAGAGGACAGATGAACATGTCCGAGAATACTTGATATATCGCGGCTTCACCAGCACACGGAAGCACCTAAACTAAATAAAAGCAGACAAGGTGAAAGGTTTCCGGGTGGACAAGATCGTTGATCGCCTTCAGCTGTTCATCCATAACTTTGACCTGAATGGCCCGAAGGACTACTGGGGTTACCTGGACCAGAGACTGTGCTGTAGGCTAGAAGACATCTTCAGACCAACAGTCACAAAGCTACAGACCAGTCTCTTCAGATACTATGTTGTTTATGGTGTACAGGTGCAgaaccatgaGAAGACCCAGGAGTTGTCCCAGCATCAGGCTCAGGAACTGCAGGGTCAGTCAGAGTGGCGTGATTGGTTCATCCTGTCGTTTATCACCTGTCCCCGAGCAGAACCAGTCATCTCGCCATACTTCTCCCATCAGTGGTCTGACACCTTCCTGGTGTCACTGCATAActtcctctctgtcctgttccaATGCATGCATATAATTTTGTTCTGGGCAAGACTGTAGACACActa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU410823 lncRNA upstream 651 5575979 ~ 5576363 (+) True G361498
TU410821 lncRNA upstream 3866 5572932 ~ 5573148 (+) True G361496
TU410819 lncRNA upstream 6399 5568819 ~ 5570615 (+) True G361494
TU410654 lncRNA upstream 45506 5529977 ~ 5531508 (+) True G361365
TU410595 lncRNA upstream 70690 5421414 ~ 5506324 (+) True G361318
TU410834 lncRNA downstream 63021 5640961 ~ 5661068 (+) True G361509
TU410841 lncRNA downstream 69942 5647882 ~ 5653784 (+) True G361516
TU410843 lncRNA downstream 74112 5652052 ~ 5655858 (+) True G361517
TU410878 lncRNA downstream 94193 5672133 ~ 5672494 (+) True G361542
TU410882 lncRNA downstream 98024 5675964 ~ 5676904 (+) True G361544
XM_036976648.1 mRNA upstream 118149 5417468 ~ 5458865 (+) False LOC110524934
XM_036976650.1 mRNA upstream 118149 5417468 ~ 5458865 (+) False LOC110524934
XM_036976647.1 mRNA upstream 118149 5417605 ~ 5458865 (+) False LOC110524934
XM_036976649.1 mRNA upstream 118149 5417605 ~ 5458865 (+) False LOC110524934
XM_036976651.1 mRNA upstream 118149 5417605 ~ 5458865 (+) False LOC110524934
XM_036976655.1 mRNA downstream 94709 5672649 ~ 5760948 (+) True LOC110522836
XM_036976667.1 mRNA downstream 910462 6488402 ~ 6555494 (+) False LOC110523126
XM_036976668.1 mRNA downstream 910462 6488402 ~ 6555494 (+) False LOC110523126
XM_036976669.1 mRNA downstream 910462 6488402 ~ 6555494 (+) False LOC110523126
XM_036976670.1 mRNA downstream 910462 6488402 ~ 6555494 (+) False LOC110523126
TU410157 other upstream 277611 5296870 ~ 5299403 (+) True G360985
TU409301 other upstream 929014 4639016 ~ 4648000 (+) True G360276
TU409312 other upstream 1029158 4547035 ~ 4547856 (+) True G360287
TU409284 other upstream 1156945 4419741 ~ 4420069 (+) True G360261
TU409255 other upstream 1231497 4344082 ~ 4345517 (+) True G360234
TU411026 other downstream 225888 5803828 ~ 5927926 (+) False G361671
TU411029 other downstream 225888 5803828 ~ 5841269 (+) False G361671
TU411797 other downstream 1607986 7185926 ~ 7189819 (+) False G362297
TU411798 other downstream 1608090 7186030 ~ 7189819 (+) True G362297
TU412128 other downstream 2112500 7690440 ~ 7692514 (+) True G362554

Expression Profile