RNA id: XR_005051701.1


Basic Information

Item Value
RNA id XR_005051701.1
length 2446
RNA type mRNA
GC content 0.48
exon number 11
gene id LOC110523503
representative False

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 26174884 ~ 26186710 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tgcactgaaagtaaaggggctgaataattttgcacgcccaatttttcagtttttgatttgttaaaaaagagaAGCCTGGGCCCTGGAGTTGGAGAGGGCTCTCTCAAAGCAGACTCACAGAATCCTCCACCAGGTGCAGACATTTGAAGAACTCCTGAGGAGAGGGAAACTCAAACCGTTTGAGCAGATGAAGGTATTGTTCTGATATTTATCTCCCTTGAGTCTTGCAAATAGAGGAGCATCTTCCAGTGCTAAATAGCCACCATTTTGTATTAGTAATGATGTGATGTATCCCTTAGCTTCTCTGCCCCTAGCTTCTCCAGGGGCCGGATTCTCTGGAAAGAGGTTATCTAGCAGCACGAGATGAACACAGAGTCCAACTGCAGAGAGTGGCTGAGCCCCTCTGACCCAGggaGTTGGAGGGACGTATATCCAGTGTGGGATGCGCTTGGAGGAGCTCAAAGAGCAGGTGGAGCAGACTGAACAGGACCGACCCACCTCAGAGGCCCCTCCCACTCTAACGCCTTACCCCACCCCCTACTCCATGCCAGAAGGGGGCAGAGAGCACATGCCACTCCCTGAGCTACCAGAGTTTCAGGGAGGTGCCACGACTGCTAGACCTGGATCTAACAGAGGGAGACCATGACTTTCCTGATGCAGGAGAAGAAGCCACACATGCAGGCGGTGAGCGGACAAGAGAGGGACCACACCCAGGGACCAGGAGGGAGGAGGGCCACACAAGTCTCCCTCGGAGATAGCCAATGCTAGGTGAGAAGGACGCTACATTCATTCCAATGGCAAGACCAAGGACCAGCAAATCAGTTCTTTGTTCCCCTAAAGACCTCAGCCAATCCCCTGCATTTCATGGCTCGTCTGCCAGTGACAGCAAGAAGTCAGAGTTCAGGAAGTCTCGAGGCAGCAGTCTCACCAGTCTGGGGGAAAGTACTGCGTCAGAGAGGAGGGGCTCCAAACTGCAGCCTGGGACCAGGAGAGTGTAATCTCAGgataggataggatcatCTCACCCGAGATGTGGGCTCTGAGAGCGGTCACCTGACTCCTGCAGCACCCAGTCTCTTCCACCAGATGGCCACAGCGAGcgaatgacggggatttgggccttgtccggtgtctgaagtaaatccttcgcgTCCGACTCTGTAAAGAAAAAAACGTTGTCTAGtatgagtcTGTGTAGCCTGTCAGTTCCAGAGGAGCAGAACTCAGGGAAGCCCCAACAcacaccccctctcccctcctcctccccctcacaaAGACCTCAGAGACCCCCCTCGCTGGAGCACAGTGGAGGCTCTCCTCTCAGCACCACAAGTCCACACTGTGTCAGGGGGACAGAGTGACCGTTCCACCTGAACACCCTATCCCCAGCACTGCTACCAGCCAAGCCACTCCACCACTGCACCCTATCACCATGGCGATCCCCCTCGGGCCCTGAGCTCTGGTCAGTTGACTAATCGCAATGAAGCCATCCAGTCTCTAAAAGTGGAAGTGAGCAGACTGAAAGTGTGACTAGAGGGCAGTCTGAGACAGACCAACCCCCTCAGCCCAGAACGACCACACACATCCTCTCAGCTCAACACATTGCATTAGACcgaaggacggagagagagacagaggcaccCGGCCACATCCCCACAGAGATGTGAGAGGCATGTCCTTTGTAGCGCCGCCCCCTCCATGCTGGGCAGTGTGCCGCTGTGCCAGTGTGCCCACCAGTTCTGTACTACTCCAGCCCAGTGATAAAGGCAGCTCAATCCCACCCCCAGTTCATCTATGTGTCTCTGAGTGGGGGTGTGGCCTCTGGGTTCAGGGGTCAAAGGTGGAGTGCCAATATTGCAATATCAAGTATCATATAGAAACAACACAAATTCATCTCTTACTCATGAAATGCACTAGAATCTGAATAATTTATATATGAATGATTTACGTTTCAAAATAACGGACATATGCTCATTGTTTGTTTAATTTGCTTTGAAACCTGGAATAttctttttacatttgttttgttaCATTTGAACAATGACTGGTATGGATCTTCAGGTGAGGAGATTAACTATTCACACATTGATTTCTTCCATTTGTTTACCCTAATTGATTGATTCTAAAtgatttgttttgtattttgttcttGATCATTTGTGTATTGTGTGAAATATTTAGTTAATAAGGTTAATAATTGGTGTCAGTGTTACTGTAGTGTAAACTTGTACACATCAGGAAAATATTTTATCCGAAGATTGAACACAAAAATGGGATTTCAGAAATGCAGATTTGGAAATCTAGATTCTGGTATCTGTTGTACCTTTGTACTGTGATTGATTATCAAATGATTTTTGTTCAAATATTTTGTAGTAAAACATTTGTATTTCCGATTTGAAGCCAAATAAATGTTGATGTTAAGACAGAACACTTTATAGCGTCACAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU434986 lncRNA upstream 6736 26167202 ~ 26168148 (+) True G382815
TU434982 lncRNA upstream 21426 26152625 ~ 26153458 (+) True G382811
TU434966 lncRNA upstream 194256 25980401 ~ 25980628 (+) True G382795
TU434853 lncRNA upstream 359321 25806737 ~ 25815563 (+) True G382689
TU434814 lncRNA upstream 379474 25794101 ~ 25795410 (+) True G382652
TU435100 lncRNA downstream 4324 26191034 ~ 26199874 (+) True G382925
TU435197 lncRNA downstream 174267 26360977 ~ 26447516 (+) True G383018
TU435282 lncRNA downstream 289406 26476116 ~ 26482496 (+) False G383082
TU435283 lncRNA downstream 289406 26476116 ~ 26481646 (+) True G383082
TU435962 lncRNA downstream 331488 26518198 ~ 26520085 (+) False G383723
XR_005051693.1 mRNA upstream 7981 26162083 ~ 26166903 (+) True LOC118964579
XM_021602252.2 mRNA upstream 25263 25995648 ~ 26149621 (+) True whrna
XM_021601319.2 mRNA upstream 219376 25952094 ~ 25955508 (+) True LOC110522854
XM_036977140.1 mRNA upstream 236364 25869743 ~ 25938520 (+) True LOC110523500
NM_001124629.1 mRNA upstream 381885 25672900 ~ 25792999 (+) False cacna1b
XM_021602258.2 mRNA downstream 50594 26237304 ~ 26276613 (+) True LOC110523506
XM_036977144.1 mRNA downstream 98497 26285207 ~ 26309660 (+) False LOC110523505
XM_021602255.2 mRNA downstream 98856 26285566 ~ 26309671 (+) True LOC110523505
XM_021602260.2 mRNA downstream 126788 26313498 ~ 26351948 (+) True LOC110523508
XM_021602262.2 mRNA downstream 178571 26365281 ~ 26369801 (+) False LOC110523509
TU434321 other upstream 949154 25225442 ~ 25225730 (+) True G382186
TU433317 other upstream 1398455 24687739 ~ 24776429 (+) True G381239
TU432381 other upstream 2330539 23838524 ~ 23844345 (+) False LOC110523468
TU432383 other upstream 2331038 23838524 ~ 23843846 (+) True LOC110523468
TU432380 other upstream 2332168 23838524 ~ 23842716 (+) False LOC110523468
TU435241 other downstream 250909 26437619 ~ 26460696 (+) False LOC110522865
TU435244 other downstream 250949 26437659 ~ 26460535 (+) True LOC110522865
TU436048 other downstream 475128 26661838 ~ 26663613 (+) True G383794
TU437362 other downstream 1488642 27675352 ~ 27683393 (+) True LOC110522888
TU437387 other downstream 1520004 27706714 ~ 27707078 (+) True G385053

Expression Profile