RNA id: XM_036976546.1


Basic Information

Item Value
RNA id XM_036976546.1
length 5110
RNA type mRNA
GC content 0.53
exon number 9
gene id LOC110522888
representative False

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 27675352 ~ 27719165 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATAACATATCCGCAGTCTACTCAGTGAAGTTTGCTTTTGTTGCGTCCACAATAAACGGTGAATGTAAAAGAATACCACAACTTGGATCTTTGTTCTACAATTTGGCGATCCACAAGCGAAAGTGAATTTTACGCAGAAAAATTAGACGGAGGCAAGGTGCAGAAAGTAGCGTAAAGTGGATACCCAAACTGGTGGACCTAAACAACACTTCAGTTATTACTTGGAACAGGAATTTACCGTTGCATCTGTTATCAACAGagagttaaatatatatattcattacAGCTCTTTACTTTGTTGGGGATTGAAAAAATGTAAATTACCATAGATGTGTGTCAATTGAGAGCAGAAAGTCTGACGCTGTTCTCTTGGTACGTTGTTAGAGCTCTCCTGTAGATAATCAGGACTGTCCAACTTGCCAAGATGCTTTATTTGCCTCTCTTTTGGATATTGCCAATTGTCACAGTATTAATTTTCAAACTTCTGACAGGTGTACACTGCCAGGAGCTGTCCAAGGACACCAAGAACCAAGCTCCCTTCCCTGTCTACCCTTCAGTTGGCTACCAGATCCTCAACGCAGACCACCTGCTGTTGAGGGACTACAGCCAGGAGCTGCTGGGGAACTCCAGCCTGCAAGCCCAGAGGCAGGCCTTCCTCATTACCAACCCCGGGGCGGGCCGCCTGCAGCCGGCCGTCAATGTCACCTTCGGCTCCCTGTCTGTGGAGAGACCCATCGGCCCAGAGCTGCTCCTTGGCAGTCGCAGGATCCTCCCTGTCATCCTGGCACGCCAggtcctctcctctgcccccATTATCAGGATCCTCTTTCACATGCCCAGTATGGCCAATGGAGGTGATGCTGGAGGGGGCAGGGCtggggagggggtggaggtgggTAGTGGTGGGAGGAAGGGAATGGAGGAGGGGGCCCACTGTGTGACGGCGTATGCCTTCTGTGAGACGCAGGAGGTGCGGGGGGCATGCCTGCTGTCCCCAGGGGGTTTCTGTGTTGCCCAGTTGAAGCCCGACCTGGCCTGGTTCAGCCCCACCAGCAGCTCCGACAgcagggatagacagggagaggtgCAGGGTATTCCCGTGGAGATCTACTTCCAGAGCCGACGGGACTGGACAGGCCAGTGTGTTCCCCAGGACAGCCTGCAGCATGTGGGGGTGGGGAGGGGCGGCCCAGTGGGATCTGGTATACCCATGAGGAGGGTAGGGAGTGTCAACATCCTAAAGGCACCACCTGGAAGCCCTACGTTCCTGCGTCTGAGGTTAGGGGGAGCCGTGGTGGTCCAGACCTCATCCAAACCCCTGAGGACCACCGACATGGCCACCTTCTATGTCTTCCTGTCCAGTGTGTCTGCTGTGGAGAGCTTCACTCTTAGAGCCACAGTGAGGAAGGGCATGTCGTTCAGTACAGCGAGGCCCACAGACTCAGCCTTATGGGACATCGCCCTGGAACCTGGCAGAAGGGGCGCAAATACCATCTCTGTcgtgtgtcagaggaagaccaGCAATCCCGGGAAAAGGGGTCTGTTGGAGGTCTTGCAGCTTGACTTTGAGACCAAGGAGTTGACTGAGCAACAATTGGAGAGCCAGATAATCACATGGCATTTGGAAACAGGACACATTAAGGATGTTGGCATCATGAAGATCTATACCACCCAGAGAGACTACGTAGGCCTGACACCACTGGTCATGGACAGTGATGTGATGAACACAGCTGTACTGACTGGTAAGAAAGTGTCTGCCCCAGTCAGGACTCTGGCTGTGGAGGCTGACGGCACTGTCACCGATGtcaccaactataccaactgtAGGTCCACTGACGAGAACGTGCTGAAGAGGATGTGTTATTTAATAGCTCAGCATCCCCCTGTGTCCCCCCAGGTGTCGGATCGTTGTGACTATGTGTTTGTTAATGGGAAGGAGACGAGGGGGAGGATGAGGATGGTGCTCAACTTCACCTACAGCTACCTGAGTGCCCAACTGGAGATGAGTGTGTGGATGCCCCGCCTCCCCCTGCTTATCGACATAGCCAACCCCGAACTCAGCCAGATCAAGGGCTGGAGAGTCCCCGTGGCCGCCGGCACCAAGAGGACCAGCTGGgacagtgaggaagaggaagagataaGGAAGAGCAGAGGCTGCATGCTACAGTACCAACACACCGTGGTCAGGGTGCTCACACCCTTTGTGGCCGAGCCGTCGGACCCATCTCCAGACCCCATGGTAGGGGGATTGAGGGGGTCTCTGGAGACTTTTCTGGGGCCAGACTGGCAGGTGGATGTCACCAGGCTGGTGCGCTACTCTCTCAGGGTGGGAGACCAATCTATAGCCAGACTACATGCTGGGACAGTACTGCAGGGACGCGCTGCAGGGACCACCACTCTACAGGTGATGTCTCCTCTGTCTGACTCGATCCTGgctgagcggatggtcagggttCTGGAAGACAAAGTGAGTGTGACAGAGCTGGGAGTGCAGCTGGTCTCtggcctctctctgtccctccagctCAGCCCAGGGAGAAACATGGCCATCATTGCCACGGCTACAATACAGGAAGtcatgcagagacccaaacagGAGGCAATGGTCAGCTGCTGGATCCAGTTCAGTGACGGCTCAGTGACCCCTCTGGACCTCTTTGACCGCAGCGTCTACTCCCTGACTGTGACCTCTGGGGACAAGAGTGTGGCGACCGTGCGCCGGACCCCCCAGTCAGCATTTGTGGTGGCGGAGGGTGAGGGTCAGGGGGCGCTGGTGAAAGCTGAGCTGAGGATCTGTGAGGAGTGCCAGAAGTCTAAGAGGAAGAGCAAGCTGGTGGTGGGCAATGGGCTTCTTAGGGTCACTTTCCAGAAAGGCAGCAGGATGGACGGAGGGGTCACTGGTGGTGGTGCTACTGGCTATGGCAGTGAAGGTTCAGAGTCAGAGGTAGAGCCTGAGCCAGTCGTGACATCACCACGGGAACTCACGCCAGTTGTGACCTCACCACGGGCTCTGATCGAGGGGGACGGAGACAGACGCTCGTTCAGGAGCACCGTGCCAGACTGCCAGGACAGCACTGTAACTGATGTCACCACGTCAACAGCCAGGGATCAGCAAGCTGCTGGAGGTGGCATTTCTACCATCAGAGAGGGcatcagctgcagcaccaccaacACTGCCAGTAGTACCACCACCAGGGGAAAACCTGGCACGGACAAACCTCAGGTGTCTGGCAGACCTGGCAGGGTCAGAAGCCTGGGCAGAGGACAGGAGCTGAGGAGAGACTGGCGGAACGTGGTGGAAAACCCCAACCAGAAGAAAGAGATGCCCAAAGCAGAGGCACCACCCCAGAAAGAGCAGCCCAAGCCGCCCCAGATGGTGGAGAGTGACCTGGTGAAGACGTTCAAAGCCATGTCAGACCTGGAGATTGGCATCTTCGCGCTGGTGGGAGTCTCTGTCCTTGCTATCCTCGCCTTCCTGCTCAACTGCGCCTCCTATAATCTCTGCTTCCGGGTCAACAAGACCCCCGTCCAGGGCAACCCAGACCCCAACGGCCCCAAGGAGCACAGGCACGACTGGGTGTGGCTGGGGACCAGCACAGGGCCAGCGCCTGACAACCCACCCCAGGTCTCCACCATCAAACGGGAGAACCACGGCTCTATTGAGTCCCACTGCAGCCTGCAGAGACAATGCTCCACAGATAGCCACAGGGCTCTGGAGAGCAGCCTGAGTATGAGTGCTATCCCAGAGAGGACTGCCACCTTGGGTAGGAGGAGCAGCTCCCAGCAGGTTCCCACCCTGGACCCCATGGCTCAGGGTTCAGCCACCCTCCTGGCCAAGCCAACCCGCAGCGATCCACTCCACTCCCCCACCAGCAAGAGGAATCAGGTCCAGTTCACCACCTTCACCACACTGGACGTTAAGCACTTGGCTGCCCTGAAGAGGAACGGAGTGGACTTTAACTGGGCCAGTCAGGCTGGGGGAGCTGGGGAGCCTAAGGGGCCTCTACCTGACATGCTATGGCCTGTAGTCACACCCCTGGGCCAACCACAGTGATACTCCAAatgggttctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgttctgaaccTGTTTAAGTGTTTAAATGTGTACAACTTAGTGAGGATACACTTTCtcgtacacatacacatattaaTAGGTGTAAGGTCTCTTCCTTTCCATTAAGTCACACACATGACCAAATTACCAAATTAATGACCAGACCTCATTAATACGGGATGGTGAAAAGTGTTGTATGCTTATAACTgtaaataatgtactgtatatttctaCAGATAGTTGTTTACACATTTCTAACTGTTTAAATGCATTTAATTACTGTTTCATTTCATGTCACTTTTGAACATTTGTATGAGAAAATGCATCATGATATATTTGTATGTGGTTATACACTTTCCAGGCTTTGTATATGTCCTAAACAGAATAGCTTATAGTTTGTTCAATTTGTCAGAGAAAATGcaatatttataaaatatattgGAGCTCTGACAAATGGTGCTCTGTCTGTGCAATACTATTGCCTTTTTTAAGGCTGAAAAGGGATGTTAAATGTTAAATATAGTGGAACTGAAAGCGTTTTAGAAAAAATCTAATCTTAAAATCTGTTCATAAAAAGGAAcaggccttcctgtgatatcgggtgctgtaggtggcctggagggcgggtagtttgcccccagtaatGGGTTGGTTGCCATACCAGCCCAACAATATGCTtttaattgtgcatctgtaaaaatttgtgagggttttaggtgacaagccaaatttctttagcctcctgaggttgaagaggctctgttgcgccttctccaccacactgtctgtgtgggtggtccatttcagtttgtcagtgatgtgtacgccaagtaacttgaagctttccaccttctccactgcggctcCTTCGATGTAAATGGGGGCTGCACCCTCTGCTTTTCcccgaagtccacaatcatcttctttgtttaGTTGAAATTGAGTgaaaggttgttttcctggcatcaCACTCCCagatccctcacctcctccctgt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU437238 lncRNA upstream 190806 27484354 ~ 27484556 (+) True G384917
TU437087 lncRNA upstream 304015 27370929 ~ 27371347 (+) True G384773
TU437084 lncRNA upstream 306669 27368457 ~ 27368693 (+) True G384770
TU436465 lncRNA upstream 408852 27262252 ~ 27266510 (+) True G384200
TU436356 lncRNA upstream 537629 27137530 ~ 27137733 (+) True G384092
TU437478 lncRNA downstream 137515 27856680 ~ 27856887 (+) True G385139
TU437483 lncRNA downstream 144125 27863290 ~ 27891266 (+) True G385144
TU437512 lncRNA downstream 185880 27905045 ~ 27905332 (+) True G385172
TU437522 lncRNA downstream 200889 27920054 ~ 27920350 (+) True G385182
TU437859 lncRNA downstream 241039 27960204 ~ 27960582 (+) True G385498
XM_021602295.2 mRNA upstream 11328 27659144 ~ 27664034 (+) True LOC110523527
XM_036977170.1 mRNA upstream 18056 27585607 ~ 27657306 (+) False LOC110523526
XR_005051579.1 mRNA downstream 16713 27735878 ~ 27741089 (+) True LOC118964522
XM_021602297.2 mRNA downstream 263480 27982645 ~ 27994415 (+) False LOC110523528
XM_021602296.2 mRNA downstream 267218 27986383 ~ 27994423 (+) False LOC110523528
XM_021602299.2 mRNA downstream 267226 27986391 ~ 27994415 (+) True LOC110523528
XM_021602300.2 mRNA downstream 288908 28008073 ~ 28016052 (+) False si:ch211-222n4.2
TU436048 other upstream 1011749 26661838 ~ 26663613 (+) True G383794
TU435241 other upstream 1214666 26437619 ~ 26460696 (+) False LOC110522865
TU435244 other upstream 1214827 26437659 ~ 26460535 (+) True LOC110522865
TU434985 other upstream 1488672 26174945 ~ 26186690 (+) True LOC110523503
TU434321 other upstream 2449632 25225442 ~ 25225730 (+) True G382186
TU437511 other downstream 185302 27904467 ~ 27904731 (+) True G385171
TU438217 other downstream 697440 28416605 ~ 28417555 (+) True G385805
TU438959 other downstream 1207112 28926277 ~ 28930931 (+) False spag8
TU439971 other downstream 2022635 29741800 ~ 29746194 (+) True tbx5a
TU440079 other downstream 2177821 29896986 ~ 29898134 (+) True G387516

Expression Profile