RNA id: XM_036977200.1


Basic Information

Item Value
RNA id XM_036977200.1
length 6319
RNA type mRNA
GC content 0.58
exon number 44
gene id ank1b
representative False

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 28269837 ~ 28346918 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AGACAAAAATTATTTGAAGGAATCTGCAGTTCGTGTGCCCTTACAATTCTATTTTACACACACAGTTCTCAGCAGCTTGGTCAGTgaagtagaggacagtagaggaggaggatagagagaagcagatgaGGACATaccagagggagaaagagagagggagctctGCAGCAGGATCCCCACCGTGCTGAGCACAGGACTGCGTGACTGGTCTGTGCtgggtgagggggaggggaggcatATCAGTGCAACACAGCCTTACTGgatgagtagcagcagtaacactaGCAGCATCTCATTTGTGGCTGCTGGGGGCtcggtctcacacacacaggcgctCCCAGCGCCACCGTCACACACACGCAGTGGCAGCCACAGCCGTCGTTAGAGCCTGGGCTGGGGCAGGGACGGGGACCGCTACTGTGACGACTGGAGCTACGGCGATAGCAGCTGCTGCACCATGGCACAAGCCGCCAAGCAGCTACGCAAGAACAAGGACCTAGCGGAGCTCGCCGCTCAGGAGCTgaaggataaggaggaggagaagaacaaGAAAAGGAATCGATCGAGGGACCGAAGACGCAAGGCGGATGCTGCCACCAGTTTCCTCCGTGCGGCCCGTTCAGGGAACCTGGACAAGGCTCTGGACCACATCAAGAATGGAATAGACATCAACACATCCAATCAGAATGGGCTCAACGGTTTGCATCTGGCCTCTAAAGAAGGCCACGTCAAGATGGTCCTGGGGCTACTACACGCTGGCATTGTCCTGGAGACCACAACTAAGAAAGGGAACACTGCCCTCCATATCGCTGCGTTGGCAGGCCAGGAGAGAGTGGTGGCTGAGCTCGTCAACTATGGAGCCAACGTCAATTCCCAGTCACAGAAAGGCTTCAGCCCCCTATACATGGCTGCACAAGAGAACCACTTAGATGTAGTAAAGTTTCTGCTAGAGAACGGAGCCAATCAGAGCCTTCCAACAGAGGATGGGTTCACGCCACTGGCGGTGGCTCTTCAGCAGGGTCATGAGAACGTGGTGGCCCTGCTCATCAACTATGGCACCAAGGGCAAGGTCCGTCTGCCTGCCCTGCACATCGCTGCACGCAACGACGACACACGCACTGCCGCAGTGCTGCTGCAGAACGACCCTAACCCTGACGTCCTCAGCAAGACTGGCTTCACTCCTCTCCACATTGCGGCTCACTATGAGAACCTGAGTGTGGCCCAACTGCTAATAAACAGAGGCGCCAATGTCAACTTTACTCCCAAGAATGGTATCACCCCCCTACACATAGCCTCCAGGAGGGGTAATGCGATCATGGTTCGACTTTTGCTGGACAGAGGGGCCCAGATAGATGCCATGACCAAGGATGAGCTGACCCCTCTGCACTGTGCGGCCAGGAACGGTCATGTCAGGATCATCGATCTCCTGCTGGACCTGGGGGCTCCCATCCATGCCAAGACCAAGaatGGCCTGTCCCCCATCCACATGGCAGCCCAGGGAGACCACATGGACTGTGTGAGGCAGCTCCTCCAGTACAACGCCGAGATCGATGACATCACGCTGGACCACCTGACCCCTCTACACGTGGCGGCCCACTGTGGTCACCACCGCATGGCCAAAGTGCTGCTGGACAAGGGGGCCAAGGCCAACGCACGTGCACTGAATGGGTTTACTCCCCTCCACATTGCCTGTAAGAAGAACCACATGCGCTCCATGGACCTTCTGCTGAAACACTCTGCCTCCCTGGAGGCCGTCACAGAGTCTGGTCTGACTCCTCTTCATGTAGCTGCCTTCATGGGGCACCTGAACATCGTGAAGAACCTGCTCCATAGAGGAGCTTCACCCAACGCCTCCAATGTGAAAGTGGAGACGCCCCTCCACATGGCATCCAGGGCAGGCCACTGTGAGGTGGCTCTGTTCCTGTTGCAGAACACAGCACAGGTGGATGCCAAGGCTAAGgATGACCAGACACCTCTCCACTGTGCGGCCCGTATGGGACATAAGGAGCTGGTCAAGCTGCTCCTAGAGCACAAGGCCAATCCCGACTCTGCTACCACCGCTGGCCACACCCCCTTACACATCGCCGCCCGCGAGGGACACACCCACACCAGCCGCATCCTCCTGGACGGGGCGGCCCAACAAACCAAGATGACAAAGAAAGGCTTCACTCCTCTCCATGTGGCCTGTAAGTATGGCAAGGTGGatgtggttgagctgctgctgGAGAGAGGAGCCAACCCCAACGCGGCTGGAAAGAATGGCCTGACTCCTTTACATGTGGCCGTCCATCACAACAATCTGGAGGTGGCCAAGCTGCTGGTTAGCAAGGGAGGCAACGCACACAGCACTGCCCGGAATGGCTACACTCCCCTGCACATTGCAGCCAAGCAGAACCAGGTGGAGGTGGCTGGCTGCCTGCTGCAGTACGGAGCCTCTGCCAACGCTGAGTCCCTCCAGGGGGTCACGCCCCTCCACCTGGCCTCCCAGGAGGGCCAGCCGGACATGGTGGCCCTGCTCATCTCCAAACAGGCTAACGTCAACCTGGGGAACAAGAATGGACTGACCCCTCTGCACCTGGTGGCCCAGGAAGGTCACGTAGGGATAGCAGACACCCTGGTCAAACAGGGGGCATCAGTCTACGCAGCCTCACGGaTGGGCTACACAGCGCTTCACGTGGCCTGTCACTATGGCAACATCAAGATGGTGaagttcctcctgcagcagcaGGCTCATGTGAACAGCAAGACCAGAgTGGGCTACACTCCCCTGCATCAGGCCGCCCAGCAGGGTCATACTGACATCGTTACCCTGCTGCTCAAACACGGAGCCCAGCCTAACGACATCACCACTAATGGGACTTCTCCTCTGGGCATCGCCAAGCGTCTGGGTTACATCTCTGTCATTGATGTGCTGAAGTTGGTCACAGAGGAGGCTGTTTCCGTGATCACCACAGAGAAACATCGGATGAGTTTCCCTGAGACAGTGGATGAGATATTGGACGTTTCAGAGGATGAGGgCATTGCAGCGCTAACATTAGGTGATGAGTTGCTGGGGATGGATGGTGCTCGCCACCTGAAGCTTGACGACCTCAAGGACCAGGATGATGAATTCCTGTCCCCTAAGAAGACCCTGAGAGACTTTGAGGGTGGACTGGGTACCACGCCATACTCTCCTGCTATTCCCAGAATCCCATGCGTATCCCCTGAGACCGTCCTGCTGGAGGGGCACACCCCTGTCCCCCTGCCTAAGGACTATGATGAGGACTCTCTGATCCCCAGCAGTCCTGCTACAGAGACCTCTGACAACGTTAGCCCAGTGGCCAGCCCTATACACACAGGGTTCCTGGTCAGTTTCATGGTGGATGCCCGGGGGGGCTCCATGCGTGGCAGCAGACACCACGGGCTGCGTGTCATCATCCCCCCTCGGACCTGTGCAGCCCCTACCCGTATCACCTGTCGTCTGGTCAAACCCCAGAAACTCACCACCCCTCCCCCGCTAGTGGAGGGAGAGGGCCTGGCCAGCCGTATCATCTCCCTGGGGCCCTCCAGTATGCAGTTCTTAGAGCCAGTGATAGTGGAGATTCCGCACTTTGCTGCTCTGGGTCGAGGGGACCGGGAGCTGGTGGTTCTGCGCAGTGAGAACGGCTCTGTCTGGAAGGAGCATCGCAATCGCTATGGCGACGAGGTGCTGGAGACCATTTTGAATGGCATGGATGAAGACCTGGAGAGTCACGAGGAGTTGGAGAAGAAGAGAATCCGCCGAATCATCTCCACTGACTTCCCCCTCTACTTCGCTGTGGTGTCCCGTGTTCAGCAGGAGAGCGACCTGATTGGCCCAGACGGAGGTCAGCTGACCAGTAACCTGGTCCCTCATGTCCAGGCCATCTTCCCTGAGACAGCGGTCACCAAGAGAGTTCGGCTGGGGCTGCagGCTCAGCCGATCCCAGACGAGCTGCTGACTCAACAGCTTGGTAACCAAGCGACCTTCAGTCCAGTGGTCACGGTAGAGCCACGACGACGCAAGTTCCACCGGCCAATCGGATTACGTATCCCACTGCCCCCTTCTTGGAGGGAGAGTCCACGTGACGCTGGGGAGGGGGACACCACCAGCCTGCGCCTACTCTGCAGTGTCATTGGTGGAACAGCACCTGCCCAATGGGAGGATATAACTGGCACCACCAAGCTGATGTACGCCAACAACTGCGCCAACTTCACCACCAACGTCTCCGCAAGGTTCTGGCTGGCAGACTGCCCTCGCACGGCCGAGGTGGTGACCTTCGCCAACCTGCTGTACCGGGAGCTGATGGCAGTGCCCTACATGGCCAAGTTTGTGATATTCGCAAAAATGAACGAGGCGCGCGAGGGCCGCCTACGCTGCTACTGCATGACCGACGACAAGATGGACAAAACCCTGGAGCTGCATGAGAACTTCAGCGAGGTGGCACGGAGCAGGGATATAGAGGTGATGGAGGGCATGCCGCTGCACCTGGAGTGCTCTGGGAACCTGGTGCCTGTGAGGAAGGCCACTCAGCAGCCACGTAGCTTCAGCTTCCAAGCCTTCAGAGACAACAGACTGCCTGTCTCGGTCAAGGTTAGAGACAGCAATAAGGAGGCATCTGGGTTCCTTTCTTTCCTACGGAAGTCTACCAAGTATGAGGACTCCCAGCATGTGCTGTGTAACCTCAACATCACCATGCCACCCTGTGTCAAGGTTGTGGGGAGTGAGGAGCGCAGGCGAACTCTGACCCCACTGGCCCTGAGGGAGCGCTACAGCATGCTGAACGAGCCCGGTCTCGtgaatGCCATGGAGAGGACAGAGCTCAAGATCTCCCTCATTTCTGAACAGCTGGGCTTGAGCTGGGCAGAGTTGGCGCGGGAGCTGCATTTTGGTGTGGATGACATTAACAGAATCAGGGTGGAGAATCCTAACTCCCTCCTGGACCAGAGTTCAGCCCTGCTCAACCTGTGGGCCGGACGGGAGGGCAAGCGGGCCAAGATGGAGAGTGTGTATGGGGCTCTCAAAAACATTGACCGTTCAGACATTGTGAGTTCAGTGGAGAGCCAGCCACAGGCAGAAGCCGGGGCCTCAGAGGATGGGGCCTGCAGACTGGCCGACAGCGACTCCACCATGCTCTCCCCCAGTGTTATCAATGAGATCACGGACACAGGTCGTCCACCTGTAGTCTACAAGCCACGAGTTATTAGGCACCCATTTTTCACAAGGGGTTACGGGCTGGTGCAGGAGGAGCTGCTCTCCCCGGCCTCCTTGCAGTACAGCCTGCCCTCTCCACTGGGTGCTGAGCCCTACTGGCAGGAGGTCTCCGGCCTGGAGTGTGCCCCAATCGCCACCACCGAAGAAGACATCCTGATGGACATGTCTGACGTGCAGGTGTGGCCCTCGGGGGTCAGCCCCTCCCTGGTCACAGTGGAGGACTCATCCCTGGATGGCAGCAGCCGGGCTGATGACTCAGAGGGGGCCACCCTGACCCTTCCCTTCAGCCTGGGGCGCCCCAGCAGTGGGGCAAGCTGGGCCAGTGGCTCCATCATGGggctggaggaggaagaggaaggggaggtagAAGAGGTGCGGCAGGAGCCAGCAGACAGGGACAGGGTGAGGGCCAGTGGTGCGGTGCCAAAGGTCAACCTGAATGGCCAGCTGGGAGGTCAGAGGTCGGAGGGCAGGAGGGTGGAGGTAGCAGCATCAGTGGCGGGCAGCAGTgtgactggaggaggaggaggagtagggcaGAGTTCAGAGGAAGGGCTTTCTGTTGTTTCAGGACAGCAGGTCTATGCCCAGCTGTGTGAGATGTCAGGACTGAGCCGAACCATGGAGCACAACGGAGACAACAGggtgTTGGGAGGAAGTGCATTCCAGCCATACCTACCCGACAAGGACTCCCTGCATGGCTGGGCGGGGTTGCAGACACCCAGGCTGCCCCGGCAGAGTGTGGAGACGCTGATATTGTTACCAGGGTCACGCGAAGCCCAGGAGGCTATCTTAACGCCGATTCATGTTGATAAAGAGGACTGTGCTGTTGAGTTTCTGGCTGAGGAGCAGTTTGTGGACGAACATGGAAAAGTCGTCACTAGAAATGTGGGGGTGGATGTGAGGAAGGGTGCTCAGTCAGTGAAGCGCACCAGTCTGCGGAGAgtaaaacactgaaacacacatacCCAGTCCTCAAGGACCCGACATCCACTGCCAAACTATCCTCCACAAACACAAAGTCAGGTAACAGAGGGAAATGAGGAAAAgattgagaggagagaagagggaatgAAGACTGATAGAAAGACTAAGATCTGCAAAcca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU438127 lncRNA upstream 13013 28253864 ~ 28256824 (+) True G385733
TU438124 lncRNA upstream 18502 28251023 ~ 28251335 (+) True G385730
TU438120 lncRNA upstream 24294 28245238 ~ 28245543 (+) True G385726
TU438107 lncRNA upstream 51609 28217811 ~ 28218228 (+) True G385715
TU438106 lncRNA upstream 54100 28215480 ~ 28215737 (+) True G385714
TU438255 lncRNA downstream 12460 28359378 ~ 28360037 (+) True G385843
TU438257 lncRNA downstream 18165 28365083 ~ 28366503 (+) True G385845
TU438261 lncRNA downstream 19839 28366757 ~ 28367894 (+) True G385848
TU438269 lncRNA downstream 33839 28380757 ~ 28380980 (+) True G385856
TU438270 lncRNA downstream 34739 28381657 ~ 28381889 (+) True G385857
XR_005051706.1 mRNA upstream 5502 28261777 ~ 28264335 (+) True LOC118964581
XM_036977197.1 mRNA upstream 8261 28257967 ~ 28261576 (+) False LOC110518653
XM_036977198.1 mRNA upstream 8261 28257969 ~ 28261576 (+) True LOC110518653
XM_021602327.2 mRNA upstream 28167 28239115 ~ 28241670 (+) True LOC110523538
XM_036977196.1 mRNA upstream 34339 28228283 ~ 28235498 (+) True ftsj1
XM_021602334.2 mRNA downstream 59806 28406724 ~ 28416408 (+) True rnf180
XM_036977205.1 mRNA downstream 71304 28418222 ~ 28423947 (+) False rgs7bpb
XM_021602336.2 mRNA downstream 71306 28418224 ~ 28423947 (+) True rgs7bpb
NM_001124535.1 mRNA downstream 92160 28439078 ~ 28463945 (+) False ghr1
XM_021601256.2 mRNA downstream 96359 28443277 ~ 28463949 (+) True ghr1
TU437511 other upstream 365106 27904467 ~ 27904731 (+) True G385171
TU437387 other upstream 562759 27706714 ~ 27707078 (+) True G385053
TU437362 other upstream 586444 27675352 ~ 27683393 (+) True LOC110522888
TU436048 other upstream 1606224 26661838 ~ 26663613 (+) True G383794
TU435244 other upstream 1809302 26437659 ~ 26460535 (+) True LOC110522865
TU438217 other downstream 69687 28416605 ~ 28417555 (+) True G385805
TU438959 other downstream 579359 28926277 ~ 28930931 (+) False spag8
TU439971 other downstream 1394882 29741800 ~ 29746194 (+) True tbx5a
TU440079 other downstream 1550068 29896986 ~ 29898134 (+) True G387516
TU440680 other downstream 1940033 30286951 ~ 30287824 (+) True G388019

Expression Profile