RNA id: XM_021602345.2


Basic Information

Item Value
RNA id XM_021602345.2
length 2688
RNA type mRNA
GC content 0.46
exon number 14
gene id pip5k1ba
representative True

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 28720277 ~ 28733042 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ggcctaggctacttaAAGGTACGTGACAGTAGGCGGAGAATGGCACGGAAGCACCGAGGATGCTCGCACGTCACTGATTACCACAAGCCTTCAGACGAGCCAGAAACGATGAAGCCTGGTTGCAAAGTTACTTGTCTTTTCATTTAAACACGGCGATAATATTCAAGgatggcaacaacaaccaCTGAAAGTGGAGGAACCAGTGGGTCAAAAGATTACAAAAAGCCCACAGCGGCTGCCCTGAAAGGAGCCATCCAGCTGGGCATTGGGTACGCAGTGGGGAACCTGACATCCAAGCCTGACAGAGATGTACTCATGCAGGACTTCTACATGGTGGAGAGTGTCTTCCTACCCAGTGAGGGGAGCAACATGACACCAGCACACCACTTCCCAGACTTCCGTCTCAAAACCTACGCCCCTCTCGCCTTCCGCTACTTCCgagagctctttggcatcaaagCAGATGACTACCTGTACTCCATCTGTAACGAACCTCTGATTGAGCTGTCCAACCCCGGGGCCAGCAGTTCCTGGTTCTACCTGACCAGCGACGATGAGTTCATCATTAAGACTGTGCAACATAAAGAAGCTGAATTCCTGCAGAAACTCCTTCCTGGTTACTACATGAATCTGAATCAGAACCCGAGGACACTGCTACCTAAGTTCTATGGCCTTTACTGCATCCAGTGTGCCGGGGTCAACATCCGTCTGGTGGTGATGAACAACGTGTTGCCCAGGGCCCTTAAGATGCACTACAAATATGACCTGAAAGGCTCCACCTACAAACGACACGCCTCGCGCAAGGAGCGTGCCAAGTCCTCGCCCACTTTCAAGGACCTGGACTTCCAGGAGATGCTCGAGGGCCTGCACTTTGATGGCGACACGTACAGTGCCTTGATGAAGACTCTGCAGAGGGATTGCAGGGTCCTGGAGAGCTTTAAGATCATGGACTACAGTCTCCTGCTAGGGGTGCATGTTCTGGACAAGAGTCTGGAAAGGGGGGCCAGGGGGGACAGTAAGCGCCTCAACAGCCAGAGGGTCCTCTACTCCACCGCCCTGGAGTCCATCCAAGGGGAAGGCGATGGCAAGGTTGCAGAGCCAGTGGCAGACGATGACACAATGGGTGGAATTCCAGCAAAACACAAAGATGAGAAGTTGTTGATCTTCTTGGGGATCATTGATATCCTACAGTCCTACAGGTTAATTAAGAAAATGGAGCACTCCTGGAAGGCCCTTGTACACGATGGGGACACCGTGTCAGTTCACAGGCCCGGTTTCTATGCAGACAGATTTCTTAATTTCATGGGTGGCACTGTATTCAAAAAGATCCATCCTCTAAGAGGAGCATCCTCTAAGAGGAAGAGGAGCTCCATCCATGCGATGAGGTCAGCCTCCCAAGAGGTGCTGTCCCCCCAaaaggaggagaaggatgagaggaAGGCCCAAAGCATGGAGTGCCTGGACAGACCATTAAGTTCCTCCAAGCACCCTGACCTAGTCACTCTCCCTAAAAGTATAAAGCAGGCtgtttccttctcctcctccgctCTTCAGACTATCAAGAAAGACCTTGAGGAGCACCTGGAGAATAGTGCCTCTTGTATGACTGTGGCCCTGGATGACACTGTCCCCTTTCCCCCTACCCAGGGCAGCCCAGACTCTGTACATGATGTCTACTTGTGAAGACTGGTGGCAGAAGATGACAAGTCCCATCCAACAGCACCACAAAATAGACGATGACCTCTAAGCATCAACTGCACAACAAATGCTATCATGACAGCACTCCTCTACAAACTGTATTGCCTTTTAATGTTGTGACCTGCACTATGAAGCTGCTTTCTCCTGCTACAGTACACTTTGCTGCTACTGTAACATCAGAGACAGCCCTAAGGTTTTGAGATGGAGACTAAGGCTGTTACaaaggcagcccaattctaatatttttttcactaattggtcttttgaccaatcaggtcAGCTCTGAACAATATCTGATGTGATTGCTCGAAAAACGAATTAGTAGAAAAAATATCAGAGTTGGTCTTTTTGTGTAAACGCAGCCCTTGAGGAGCATGTCAAATCACTTCTATTCATTGCTTCTCTAACAGAGATCTGTATTTGTATGCACATCCATGTGATTATTTTCTATTGACATCACTAATAATATAGTTCAATTCTCTGAGGCTGGATCCCTGGAAGATACATTTCATCAGGTTTTTATTTGAAGCATActaaaaaaaagtatatacatGCACagagacacttttttttttgcagaaatgAAGATAAATAATCTAAAGTAGGACCAGAAAATATTGCATTGGGCAAATGCTTCATTTACATGACATACCTCTGAGTCCTCAAATCAACCCATCAAGTCACTTCACAATCAGTGCAGCAGACCTTGGACACCAGGGGACACAAAGTAGAGGACATACAGGAGTTGCCAATCAATGTTCAATGACTTGGTCAAGATTTTAAAACAATGCCATGGTGAAGGAATACCATCCAAGGCGTATGTCATGTAGCTAACGCTTTGTGAATATACCATATCAATTGTCTTCCTTTCATGATCACACAGTTCATTATATATTTCATGTAGCTGTTGTCCTATTAATGATCAGTCATGATTATACATTTTCTTTGTAAAATTATGTATTTAAGATAATTAAATGTACAGTTGGCCTA

Function

GO: NA

KEGG:

id description
K00889 PIP5K; 1-phosphatidylinositol-4-phosphate 5-kinase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU438477 lncRNA upstream 1255 28718802 ~ 28719022 (+) True G386057
TU438463 lncRNA upstream 14765 28705178 ~ 28705512 (+) True G386044
TU438443 lncRNA upstream 35263 28684742 ~ 28685014 (+) True G386024
TU438441 lncRNA upstream 37070 28682750 ~ 28683207 (+) True G386022
TU438436 lncRNA upstream 50227 28669715 ~ 28670050 (+) True G386017
TU438485 lncRNA downstream 23468 28756510 ~ 28770567 (+) True G386065
TU438898 lncRNA downstream 119838 28852880 ~ 28853151 (+) True G386445
TU438960 lncRNA downstream 194774 28927816 ~ 28930931 (+) True spag8
TU438991 lncRNA downstream 228775 28961817 ~ 28965648 (+) True G386537
TU439028 lncRNA downstream 261103 28994145 ~ 28995123 (+) True G386568
XM_021602340.2 mRNA upstream 236892 28481432 ~ 28483385 (+) True LOC110523549
LOC110522905 mRNA upstream 244739 28473547 ~ 28475538 (+) False LOC110522905
XM_036976519.1 mRNA upstream 253143 28464099 ~ 28467134 (+) False LOC110523547
XM_021602350.2 mRNA downstream 4419 28737461 ~ 28780731 (+) False LOC110523554
XM_036977208.1 mRNA downstream 4419 28737461 ~ 28780731 (+) False LOC110523554
XM_036977207.1 mRNA downstream 17713 28750755 ~ 28780731 (+) False LOC110523554
XM_021602349.2 mRNA downstream 19318 28752360 ~ 28780731 (+) False LOC110523554
XM_021602346.2 mRNA downstream 19469 28752511 ~ 28780731 (+) False LOC110523554
TU438217 other upstream 302722 28416605 ~ 28417555 (+) True G385805
TU437511 other upstream 815546 27904467 ~ 27904731 (+) True G385171
TU437387 other upstream 1013199 27706714 ~ 27707078 (+) True G385053
TU437362 other upstream 1036884 27675352 ~ 27683393 (+) True LOC110522888
TU436048 other upstream 2056664 26661838 ~ 26663613 (+) True G383794
TU438959 other downstream 193235 28926277 ~ 28930931 (+) False spag8
TU439971 other downstream 1008758 29741800 ~ 29746194 (+) True tbx5a
TU440079 other downstream 1163944 29896986 ~ 29898134 (+) True G387516
TU440680 other downstream 1553909 30286951 ~ 30287824 (+) True G388019
TU442960 other downstream 3227313 31960355 ~ 31960745 (+) True G390184

Expression Profile