RNA id: XM_021602354.2


Basic Information

Item Value
RNA id XM_021602354.2
length 2753
RNA type mRNA
GC content 0.51
exon number 14
gene id LOC110523556
representative True

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 28796448 ~ 28804711 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tccttccctccctctctctctcctcctcacagcACTGCTGTCTGGACAGAGTCTTCTTATCTGAGACTGTACAGTGTGCTGGCAGTTTGTGAGCTTGAGATATTGATATTGattgacagacacagacacagacacacaggaccaGACAGAGAAATACTGACAGTGTGGACCTCGAGCTGGCTTTGATTTTGGTTGGGACACACAATCGCTCGTGCATTAGTTTGAAGGTACTTCCGCTTGTCTCCtgtttttggattttttttaaaatttaagaCTGCAATGCTTCCATTCTACCTCTTCACCCTGTTTGCCACAGTCCAAGCCCAGATCCAGCATTTGCCAGGCTCCTGTAGCTTTGAGTCCAGCACCTGTGGATACACGTCAGACCCAAACTTTTTAAGCTGGACGCTCAACAAAGATGGGTCTTTCATCTCAGTGGACCCAGGCCTAGAGGACCAGGATGGGCAGGATGAGAGgtcggagggagaggagaggtcagagGGGGAGGGCAGGGCAGTTCTGCTGGGCCCATCCATGGAGCAGGAGGACTGGAGCTGTCTGAGGCTGGTGTACCAACTTTCCGGGTCGGGCTTTCTACAGGTCCAACAGCGCAGAGAGGGCGAGAGCTTCGACCGGGCCCTGTGGAGCACCCAGACGGCCTCCGACAGCTGGCTCATCTCCAGCATTGACCTCCAGAACAGCACCGAGCCGTACAGGATTGCCATTGACGGCAGACCTGGTGAGAGCAAAGGTAGTAGTGTGGCCATCTTTGAGATACGCATCAACCCTGGATACTGCTTAGAGTGTGACTACGAGGAGTCGCACCTTTGTGGCTACAGAAACCAGTGGAACACCAATGTCAACTggtacaggggaggaggagctgCCCGGGACACTCAGAGCAACATACCTTACGTCCACACGCACAACGGAGCAGGTCACTACATGTATGTGGATTCTGTGCACGCCAAGACATTCCAGGAGGTAGCCAAACTGGTGTCCGCTATGACAACGGTGCCCATGTCGGGCTGCCTAAGCTTCCAGTACCAGCGGGGTGAGGAGCGAGGGAACCTGTTCTCTGTCTACACCAGGGACCAGGCAGGCCAGTACCAGGAGCTGTGGAGAGCAGACCCAGAGGACCAGAGCCTTAATGACTGGACTGCTACCACCTTGGAGTGGATACCTGTGCAGGTGGACATCAAGGCCCCTTTCCCTCTGCAGGTGGTGTTTGAAGTCACCTTCAACAGCCCCAGAGGGGGTCACGTGGCACTCGATGATATCGCCTTCTCTCCTGAGTTCTGTAGTGCAGAGACAGAGCCAACATTTGATCCCTCCATCGCCAACTGTGACTTTGAGGTGGGTTTCTGCCACTACACCCAGGATCAGATGGAAAGATCCCCATGGAAGAGAGTGTCAGTCAAGCCCAACATCTACAGGACTGGGGACCACACAACAGGGGCAGGGTCCTTTCTTCTAGCTCACTCTCGGCTGAGTCCACGTGCTGGCTATATTAGCCGCCTGCTCGGGCCTCCTCTGCCCGGCAACATGAAGTACTGTCTGAGGTTCCACTACTCTCTCCGTGGATTCCTACAGACAGACCAGGCGCTCACCGTTTACCTTCAGGGTCAGAGTGGAATCATACAGGACAGGATATGGACCCAGAACGACAAGTCCAGAGGTGTCTGGATAGCAACGGACATCACCTTCCAGAGTCCACAGGCTGCAAagGTGGTGTTTGTCAGCACATGTACAAACTTCTGGGACTGTGGTTCAGTTGCTCTGGATGACATCAGTGTGAGCCTCGGGGACTGTGATCTTACAGCAGGTTTACTCCTGTCTGTCCCTGGGCATTGTAACTTTGAGATGGGTCACTGTGGGTATATTCAAGACAAGGAGGATGATAAGGGTGACTGGGTACTGGTGAGAGGACCTACCCCTACCTCCTACACCGGGCCGAAGGGGGATCACACCACAGGAGTCGGGTACTACATGCACATTGAGGCATCTAACATGCTGCCTGGTCAGAATGCCCGGTTACTCTCCAGTCCTCTGAGGGGGTCCAGTGGTCCTCAGTGCCTACGTTTCTTCTACCAGATGTACGGCTCAGGCACAGGTGAGCTTAGCATCCATCTGAGACAGGATGGAAAGGATGTGTTGCTATGGAAACACACTGGAGAGCAGAGCATCACCTGGCTGAAAGCAACTGTGGAATACCAGAGTGACCAACAGCATCAGGTTGTTTTTGAGGCCATCAGGGGTTCCTCAATAAGGAGTGACATAGCCATCGATGACATTGTGTTTGAAAGTGGACCATGCCCAGATATTGAAGTCAAAATGACCCATTCCCCAGGAAACTCAAATGACATTGAGTGAAGGAGCAGAGGACAGGAAGAGTGCTGAATAAGATGCATGCATCAATACTATGTTGCACATACGGACAAAAATGTAcacaaacattttatttttgcaaCTGTACTAATAGCACTGAATCGTTTTGCACATATTGAGGTCATACAAAAAATGCCTTGAATTGAGTAAAAGAGATTCTGCATTTACAACCAATCAAATTATATCACTGTACACGTTTTTAATTATCAGTCACACCTGACCCTACTTGCTCTTTGTAGAGAAATTGGTAGTAGTCAGTCAACATTTTCCCAGTAATAGAGGCTGTGTTGTATTCAAAATAATATGCATTAGATTAATGCTGAAATAAAGAGGGATGCTTATTCAACATGTGTGTCCTTGTCagt

Function

GO:

id name namespace
GO:0016020 membrane cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU438485 lncRNA upstream 25881 28756510 ~ 28770567 (+) True G386065
TU438477 lncRNA upstream 77426 28718802 ~ 28719022 (+) True G386057
TU438463 lncRNA upstream 90936 28705178 ~ 28705512 (+) True G386044
TU438443 lncRNA upstream 111434 28684742 ~ 28685014 (+) True G386024
TU438441 lncRNA upstream 113241 28682750 ~ 28683207 (+) True G386022
TU438898 lncRNA downstream 48169 28852880 ~ 28853151 (+) True G386445
TU438960 lncRNA downstream 123105 28927816 ~ 28930931 (+) True spag8
TU438991 lncRNA downstream 157106 28961817 ~ 28965648 (+) True G386537
TU439028 lncRNA downstream 189434 28994145 ~ 28995123 (+) True G386568
TU439069 lncRNA downstream 266101 29070812 ~ 29073163 (+) True G386606
XM_021602350.2 mRNA upstream 15717 28737461 ~ 28780731 (+) False LOC110523554
XM_036977208.1 mRNA upstream 15717 28737461 ~ 28780731 (+) False LOC110523554
XM_036977207.1 mRNA upstream 15717 28750755 ~ 28780731 (+) False LOC110523554
XM_021602349.2 mRNA upstream 15717 28752360 ~ 28780731 (+) False LOC110523554
XM_021602346.2 mRNA upstream 15717 28752511 ~ 28780731 (+) False LOC110523554
XM_021602355.2 mRNA downstream 515 28805226 ~ 28829428 (+) True smc5
XM_021602357.2 mRNA downstream 25004 28829715 ~ 28837189 (+) True zfand5b
XM_021602358.2 mRNA downstream 71862 28876573 ~ 28880143 (+) True LOC110523559
XM_021602360.2 mRNA downstream 121552 28926263 ~ 28931410 (+) False spag8
XM_021602365.2 mRNA downstream 200056 29004767 ~ 29009110 (+) True ssna1
TU438217 other upstream 378893 28416605 ~ 28417555 (+) True G385805
TU437511 other upstream 891717 27904467 ~ 27904731 (+) True G385171
TU437387 other upstream 1089370 27706714 ~ 27707078 (+) True G385053
TU437362 other upstream 1113055 27675352 ~ 27683393 (+) True LOC110522888
TU436048 other upstream 2132835 26661838 ~ 26663613 (+) True G383794
TU438959 other downstream 121566 28926277 ~ 28930931 (+) False spag8
TU439971 other downstream 937089 29741800 ~ 29746194 (+) True tbx5a
TU440079 other downstream 1092275 29896986 ~ 29898134 (+) True G387516
TU440680 other downstream 1482240 30286951 ~ 30287824 (+) True G388019
TU442960 other downstream 3155644 31960355 ~ 31960745 (+) True G390184

Expression Profile