RNA id: XM_021602367.2


Basic Information

Item Value
RNA id XM_021602367.2
length 1617
RNA type mRNA
GC content 0.47
exon number 12
gene id alad
representative True

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 29045103 ~ 29055942 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTATGTTAGTTTATGCTGCTAAATTACGTTTTGGATGTTGCAAGggcAAAGATGCAACCCGTCGAGTCTCTCCTCCACAGTGGCTATTTCCACCCAACACTCAGATACTGGCAGACCTGTGCCTCAGACTTGAGACCTGAGAACCTCATCTACCCCATCTTCATCACTGACAGCCCTGATGCTGTGGAGCCCATCGCTAGTCTACCTGGCCAGGCCAGATATGGAGTGAATAAACTGGAGGGCATGCTACGCCCCCTTGTGGAAAAGGGCTTGAAGTGTGTGCTGATTTTCGGAGTGCCTGCAAAAATAGCTAAGGATGAGAGAGGTTCGGGTGCAGACACAGACAATACTCCGGCTGTGTTGGCTGTGAAGAAGATAAAGTCTCTTTTCCCTGACCTGCTGATGGCCTGTGACGTCTGCCTCTGTCCCTACACCTCACATGGACACTGTGGAATCTTGCGGGAGGATGGCACTCTGGACAATGGTGCCAGTTGCCAACGTTTGGCAGAAGTGGCATTGGCCTATGCCCGCGCTGGCTGTCACATCATTGCACCCTCTGATATGATGGATGGGCGAGTGGGAGCTATCAAACATTCACTGATGTCTAATGACATGGGCAACAAGgTGTCAGTGCTGAGTTACAGTGCCAAGTTTGCTTCCTGTTACTATGGTCCCTTCAGagATGCAGCACAGTCCAAGCCAGCATTTGGAGATAGGCGCTGTTATCAGCTGCCCTCCGGTGCAAGGGGCCTGGCACTACGAGCTGTGGACAGAGATGTCAAGGAGGGAGCAGATATGCTGATGGTGAAGCCAGGACTGCCCTATCTGGACATAGTGAGGGAGGTCAAAGACAAGCACCCCACTCACCCACTGGCAGTGTATAATGTGTCAGGGGAATTTGCCATGCTGTGGCATGGGGCCCAGGCTGGAGCTTTTGACCTGCGCACCGCTGTACTGGAGTCTATGACTGCCTTCCGCAGGGCAGGTGCTGACATCATCATCACCTACTATACACCTCAACTGCTCACCTGGCTGAAAGAGTAACAGACAGAAGGATGGACATAAAGATGGATCATGTGACAAACTCCTTTTTACCTAGCTGTGCAAGGCTGACCTACACTGACAAATGGTGTCTATTCAAACCAAACTGACATGTGAGAACAGGCAATCTATCTTCATACATTAATTTACAGTTTATTTTTCTATATAACATTGTTACGtcatattgttttttttctttgtgtgCAGCAACCACTAATTCTCACCAAAGGTGGGAGTCTTGGCGCTAGTAGACACATATGTAAAGCGTATCAAATTCGCTTTGAAGGGTTTGTCTGTTAGATGAAAGAATGgtaatataaaatatgttgattTTGTTTTATGGGCATTATTTACTATTCTATAGTTTTCTAAATAGAGTATCAAGAATATAGGCCTTGACTTGTTATAGCTCTGTGACGTCTGTAATAGCTCTGGCTTTAGCGCTGACATTTAGCAGTGGTTGTAAGGTTGGGTCAAGAAACCTGTAAAGATCTTTTTTTACCAGGGTAAATGGTCCTGACCCAGAAAATAGAGATTTGTTAGATAACAGCAATAAAGCTacaatcaagtctgaaa

Function

GO:

id name namespace
GO:0006779 porphyrin-containing compound biosynthetic process biological_process
GO:0046872 metal ion binding molecular_function
GO:0004655 porphobilinogen synthase activity molecular_function

KEGG:

id description
K01698 hemB, ALAD; porphobilinogen synthase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU439028 lncRNA upstream 50144 28994145 ~ 28995123 (+) True G386568
TU438991 lncRNA upstream 79619 28961817 ~ 28965648 (+) True G386537
TU438960 lncRNA upstream 114336 28927816 ~ 28930931 (+) True spag8
TU438898 lncRNA upstream 192116 28852880 ~ 28853151 (+) True G386445
TU438485 lncRNA upstream 274700 28756510 ~ 28770567 (+) True G386065
TU439069 lncRNA downstream 14870 29070812 ~ 29073163 (+) True G386606
TU439295 lncRNA downstream 118406 29174348 ~ 29174799 (+) False LOC110523576
TU439294 lncRNA downstream 131679 29187621 ~ 29187912 (+) True LOC110523576
TU439304 lncRNA downstream 140945 29196887 ~ 29197098 (+) True G386814
TU439305 lncRNA downstream 141189 29197131 ~ 29197363 (+) True G386815
XM_021602365.2 mRNA upstream 36157 29004767 ~ 29009110 (+) True ssna1
XM_021602360.2 mRNA upstream 113857 28926263 ~ 28931410 (+) False spag8
XM_021602358.2 mRNA upstream 165124 28876573 ~ 28880143 (+) True LOC110523559
XM_021602357.2 mRNA upstream 208078 28829715 ~ 28837189 (+) True zfand5b
XM_021602355.2 mRNA upstream 215839 28805226 ~ 28829428 (+) True smc5
LOC110522906 mRNA downstream 5333 29061275 ~ 29067123 (+) True LOC110522906
XM_036977216.1 mRNA downstream 33583 29089525 ~ 29097342 (+) False coq4
XM_021602374.2 mRNA downstream 36818 29092760 ~ 29097342 (+) False coq4
XM_021602375.2 mRNA downstream 36818 29092760 ~ 29097342 (+) True coq4
XM_021602377.2 mRNA downstream 60549 29116491 ~ 29121227 (+) False LOC110523572
TU438959 other upstream 114336 28926277 ~ 28930931 (+) False spag8
TU438217 other upstream 627712 28416605 ~ 28417555 (+) True G385805
TU437511 other upstream 1140536 27904467 ~ 27904731 (+) True G385171
TU437387 other upstream 1338189 27706714 ~ 27707078 (+) True G385053
TU437362 other upstream 1361874 27675352 ~ 27683393 (+) True LOC110522888
TU439971 other downstream 685858 29741800 ~ 29746194 (+) True tbx5a
TU440079 other downstream 841044 29896986 ~ 29898134 (+) True G387516
TU440680 other downstream 1231009 30286951 ~ 30287824 (+) True G388019
TU442960 other downstream 2904413 31960355 ~ 31960745 (+) True G390184
TU443183 other downstream 3164239 32220181 ~ 32220533 (+) True G390393

Expression Profile