RNA id: XM_021602376.2


Basic Information

Item Value
RNA id XM_021602376.2
length 2873
RNA type mRNA
GC content 0.45
exon number 6
gene id LOC110523572
representative True

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 29116491 ~ 29121227 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GACAATAGATTAAGAACACAAAATATGTAACGCTTTTTTGGATTGGATTGAAGCTTTTCAAAACGGTATTCtcagtggttgaaaaatgtttagCTTCTTCGAACCCTCCCCCAAATCTTGCCTGGCTTTCTTCTACGCCAGCGGTGTGTCACGGAGGTTTGTTAGCCGGTGGGGAGGACCAAATTCGGACATCGATTGACCCTATTTAACCAAACTGGCAGTAAGTCGGGTCTGGGGGGTCGCCCTGACGACTTTTACACGAGTAGATCGCCTCACCTGTTCTTACATTTCGCCCCTTGATCGACCGCTCTTCCAATGTCGGATTTCAAGCTCGGGATTGTTCGACTTGGCCGTGTGGCCGGGAAGACAAAGTACACACTGATTGATGAACAGGACATACCATTGGTGGAGAACTATGCTTTTGAGGCACGCATGGAGGTAGATGCAGATGGCAATGGGGCAAAGATCTTTGCTTATGCCTTCGACATTGGCAAAGGGCGCTGGGCTGGCAGGCCACTGCACGAGCTGCTCTGGGAGAAACACAGAGGAGGCATCGCTCCCAGCTTCCAAGTAGTCCACATAAACTCTGTTACAGTGGATAACCGTCTGGACAACCTGCGACTGGTCCCCCTTGGCTGGAGCCCTAAATCAGAGGAGATCTCCAGCAAGCAAAGAGAGCAGTCGTTGTACTGGCTGGCCATCCAGCAGGTACCAGCTGACCCCGTAGAGGAGCAGTACCTGGAGCTCAGTCGTACCCGCTACTACAATGCTAACGGAGagctggtggaggaggaggagtgctcCTGTACTTACTACGAGTGTCACTACCCGCCCTGCTCGCTCATCGAGAGGAGACTTAGAGAGTTCAACATCTGTGGCCGCTGTCAGGTGGCTCGCTACTGTGGCTCCCAATGCCAGCAGAGGGACTGGCCCGCCCACAAGAAGCAGTGTCGTGAGCGCAAGAGGGTCCTAGCCCTAGAGTCTGAACCTGAGCGATGATCTCTGAATCAATCACCAGAATAGGGGAATGGGGGGGTGGAAATGAAGTGCAAGGGGGGGGAATCTGCTGACAGAGACAAATGACAGAGGACAATGTTGGTTGGTTGAAAGGGTgggaagataaaaaaaaaaaaaaaaaaaaaaactacaaccAGTTCACAGAACTACAAATCTCCATAACTTGCTTTTTTTGGAGAGGGAGGTCCTCCTGGAGCTCTACCTGCTGCTATGAATTTGTATGTTTGAGTAAGAAGAGGTCACATGGATGAAACTGGCTGTGCTTCTTTTGGACTACAATTGATTACAGTTGTCATCAGCTTTCTCCTTACTCCCACCCACCAACCAGTAATGCCGTGTGTACAGGGATATAGGGATGACAGTGCCTGCTGTTCACCTGGTACAATGGACATGGACCTTTTCACTGTACTACTACTCCCTCTTGGACCTTTGGTGCACATACTCAAGACACCTTCCTGTCATGCTCCAAGACCAACATAAAACTGATAGATTTTCCATGCTGTTTCACGCTAGCAGTATTGTGTGTGCTGCCATTATGGACTGAAGGATATAGATGAAGTGGTGAACATTTGGGGGGGAGGTTCTTTTGTtctgtgtattattattattttttgatggTGGAAAGGGGTTAGTGATTTTTGGACTTGATCACATTGTTACTTTCCTGTGTTGAACATCCCTGAATGAATCTCTCTCAATGCGATCTGTTCGGTTTCCCTTCCAGAAGCTCACACCCAGTCCCTGTCGCTAATGTTTGAGGGATGTCCTGGGAACAACTTAAACCCAGGTTGGCCATTGGACAGGCTACGTTGGGATTGTATGAAATGGCCcgaatatgttttgttttctacaCATCAGTCATTAAAAAGATCTGTTCTATGTCCAAGTGATCGTAgatgaaataatacattttccaGATCACCACCTCAGTGTACTATTGATGCATACCTGCTCAAAGTTTGTCTTCCTGTAACCTTGCTCCCATGCTATTCCACACAGTGAATATAAGCCTGGTACATCAATGATTCAAAGTTGGCTTTTTAGTGGTAGTGACCATAGCATTTTATGGGAGTGAACTTACTGAGTAAAGTATTTGTAGCTTAATTTTAGCTAGTCGTGTGACTCTGTGCTTGGGGTGTGCTGGCATACAGGGTAGAATTAGGGGAAGGTGTTGTGGGAGATGATTGGTAAATTAACCCAATGCGTATGCGCCGGGAGTTTCTCTTGGTTTTTCTGTGTTGGCTGGAGAAGTTTGAACCGTTGGTCTACCAGGCTCTTCGCATTTGGGCAGAAGTGTCTGGGAATGAGATTTAGGTGCTTTCAAGATAACTGGGAATTCAGAAATAACccaggtcaaatcatgacgttgGGGATCTTTAGGTCGGAAAGTCTGAGCTCGAGAAAGATGCCAGCTTACAACATGGAATTCTGAGTTCAATGACCATTAAAAATTACTTTCCCAGTCGGGGATAGTTTTTTCCTGACTTcgcagttgtcttgaatgcactgaagtcggaagtctgagatttcccagttgttttgaatgtggcaTTAGTCTTCCTGTTTTCTTTTAAGTTGATGAATCTTGACAAACATTCACAGATCTAGCATGTAACAAGCAGACAGATGTAATACATGCAACACATTGATTGTTAGTTATGTAGACCGGTTTATAACACTGCACTGAGTTGTTTAAACATACCCCACTGTTATATTTTTTTCAGAGGAAGGGAGAGTTTGGACCATTgggtgtctttaaaaaaaaaaaaagtttaaatggTAAAGGAAAAAGCATGAATCAGAATAAAGACTAAAGTTGGGGATAACtgtaaaatgaaataaaatgtttCACCATG

Function

GO:

id name namespace
GO:0046872 metal ion binding molecular_function

KEGG:

id description
K24632 ZMYND19; zinc finger MYND domain-containing protein 19

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU439069 lncRNA upstream 43330 29070812 ~ 29073163 (+) True G386606
TU439028 lncRNA upstream 121370 28994145 ~ 28995123 (+) True G386568
TU438991 lncRNA upstream 150845 28961817 ~ 28965648 (+) True G386537
TU438960 lncRNA upstream 185562 28927816 ~ 28930931 (+) True spag8
TU438898 lncRNA upstream 263342 28852880 ~ 28853151 (+) True G386445
TU439295 lncRNA downstream 53121 29174348 ~ 29174799 (+) False LOC110523576
TU439294 lncRNA downstream 66394 29187621 ~ 29187912 (+) True LOC110523576
TU439304 lncRNA downstream 75660 29196887 ~ 29197098 (+) True G386814
TU439305 lncRNA downstream 75904 29197131 ~ 29197363 (+) True G386815
TU439344 lncRNA downstream 155574 29276801 ~ 29277657 (+) True G386846
XM_036977216.1 mRNA upstream 19151 29089525 ~ 29097342 (+) False coq4
XM_021602374.2 mRNA upstream 19151 29092760 ~ 29097342 (+) False coq4
XM_021602375.2 mRNA upstream 19151 29092760 ~ 29097342 (+) True coq4
LOC110522906 mRNA upstream 49370 29061275 ~ 29067123 (+) True LOC110522906
XM_021602367.2 mRNA upstream 60551 29045267 ~ 29055942 (+) True alad
XM_021602378.2 mRNA downstream 12617 29133844 ~ 29135483 (+) True tmem141
XM_021602380.2 mRNA downstream 19606 29140833 ~ 29166510 (+) False LOC110523574
XM_021602381.2 mRNA downstream 19606 29140833 ~ 29166510 (+) True LOC110523574
XM_036977220.1 mRNA downstream 53092 29174319 ~ 29187968 (+) False LOC110523576
XM_036977221.1 mRNA downstream 53092 29174319 ~ 29187968 (+) False LOC110523576
TU438959 other upstream 185562 28926277 ~ 28930931 (+) False spag8
TU438217 other upstream 698938 28416605 ~ 28417555 (+) True G385805
TU437511 other upstream 1211762 27904467 ~ 27904731 (+) True G385171
TU437387 other upstream 1409415 27706714 ~ 27707078 (+) True G385053
TU437362 other upstream 1433100 27675352 ~ 27683393 (+) True LOC110522888
TU439971 other downstream 620573 29741800 ~ 29746194 (+) True tbx5a
TU440079 other downstream 775759 29896986 ~ 29898134 (+) True G387516
TU440680 other downstream 1165724 30286951 ~ 30287824 (+) True G388019
TU442960 other downstream 2839128 31960355 ~ 31960745 (+) True G390184
TU443183 other downstream 3098954 32220181 ~ 32220533 (+) True G390393

Expression Profile