RNA id: XM_021602380.2


Basic Information

Item Value
RNA id XM_021602380.2
length 4871
RNA type mRNA
GC content 0.45
exon number 6
gene id LOC110523574
representative False

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 29140833 ~ 29166510 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tttttttttttacaattagaCCCAGATGTAGGGTAAACACACATATTTCCTGACTCATTAAGTGGGTAGGGTATGAATCCTTGGGCGAATAACGTCCGGCTCAATGAATAACAAAAGCACAACTCAAACTTCTACCTTCCACAAGTTCCTACCAATAAGCGCACGGCAATTCTGACGATGACCAATGGCTGTGTCCCTAGACAAATCTGCGCAGACGTTTGAAGGACTGTCCAGTTGAAAAAAAGTATCCTGGAGCTGCAAAGGAAAGCAGTGTTTCGTCAATGGAAGGCATAAAGAGAAATGGGTAGAATTTATAATTAATTttgaataaatatagtaggctagGCTACTTATTACAAACGAATAGTTGTTGTATCACGCGCAAAGTAATACGACTTTATAACCACGTTATAAGATATATCTTGGTGAGGTTTGAGTTTGCCATTATTCAGTTCAACGATTGACAAATGAATGGCTCTGATAGTGACTGATCGGAGGTGCAAATTGAACGGGTCATCGACAATTTACGGTAGGATTGGCACAAGAAGAGAAGGCAAGACAAGCAGAACCGGTAAAATGCAGCCTAAAGACACGGAATATTCAACAGATGGGTTACCCAAAGCATTTTTACACAGTTTGAGGACACTCTTTGACATCCTTGATGACGGGAAGAGAGGGTATGTGCACATATCGGAGATTGAGAGTCGATGGCAAGGGGCAGATACTCATGATTTGCCCGGCGGGGTGCTGGAGTGCCTGAGGCGGGTGGCCCCACCGCATGGTTGCCTGACATTTGAGCGCTTCGTGGCGGGGCTGCGATACTCCATGCTGAACCCGGACAACAACAACCAAATGAAGGGCCCGTCTGCCGTGCACCCGGAACACCCGCACTCTAAACAGCACCATCTGCCAGCGCAAAAACCAGCCCCGCTTTCTGCCTGCTCTGTCGGAACTCGGATTGAAAACAAAGTTATTCCACTGGATCCGAGCAACGGGACCAACAAAACGCATCACAACCGCGCGTCCTCACTTCAGAGTCGGTCCAGACATGAGGAGGGGAACACTGGATACCCAGTCACCTCTGCCGCAGGTGGCCCCGTGCGGTACACCAATGCGGGTTATGAGAGATCAGGCAGAAGTTTGGAACGGATTCCCATTGTGCTCGAAAGCGGTTCGTATCGAGAAGATTCGGTTCGAATGGTGAAGCAAGCGCATCCACAGCAGAGTCGGGTGAGGTCCATAGAGTCCCTTGCGCTCGAGTCACCAAGCCTCCAAAAACCAAGTATTGTGGAGGCTGGTTTGCCGAGGTCCCAGAGTGAATCAGCCACAGGATTCACTGCCTCCAGACGCCATGGGCGGAGCCGGGATGAGCAGAGACGCCACACCATCACCAACGGAGTGGGTTACGGAATGCTGAAGCAGATGAAGGAGTTGGAACAGGAGAAGGACTCTCTGCTGGCTGGTCTGGAGGTGGTGGAGCGGGCTAGAGAGTGGTACCAGAACCAGATCCACAatgtcacagagagacagagacacgtgGGCCAGAGCAACCACTGCACGGATTTCTTCACAGAATCCCAGAATCAAAGTCGCATGGATGTTCTGCTTCCCAAGCTGCAGGAAGCTAACCGCTGCCTTAATGACCTCATTTCCTGCTCTGGAATGcAGTCTTTCCCATTCTCTGGCACCCAGCCCACAGCAATCTCCTCCAGCTCCCAGCCTCCTGCCACTGCCCCACCACAAGCCATTCAGAGACTGAAGGACCAGAACCGCCTTCTCACCCAGGAGGTGACTGATAAGAGTGAGCGCATCACTCAGCTGGAGCAGGAGAAGTCTGCTCTGATCAAACAGCTGTTTGAGGCTCGCGCCCGGAGCACGCATGACAGCAGTACCATGGACTCCACCTTCATCTGAATACAGACACCATAATACAACTGTAGTGGTCTCCAGCTCTATCTGACCCCCCTCCACTCACAACAAGACAACTGTATCAGACTCAACTCACCACTCCTGGCATGATGAAAGCACCTTGAACTTTGACCCCCCCACTTGACCACACCCTCTGGATCTCCCCAACTGACAACTCCAATAAATGGCCTGTACACTAATCTGGGCCGACCTCTCCCAGAGGAAAGAGACTCCCAAGTCCACCGTCCTCTGATACCTCACCCACTGGGCAGAAAGCCTGGAACACCATAGTCTAACCATTCCTAACTGGGACCTACCCAGGATTCTACTCCCCCTCGAAATACTCCAAGGATCTATTGTGATCCACTAGGATCCTACCTTATTGGACCAGACTTTACCAGACTTTCCAGACTTCCCTCCCATCACAGTATAAGCTATTTGATTGGACATCATGAACTAAATCTCAAACCCCTACATGGAGCTACTGGATCCCTgacaatcaccatgacaacagcTCCTGTACAAATGCATTAGTTGGAGGGGTTCCAttggacacacaccacacaaaatgTATTTCTTTTATGAAACATTTATTCCAGATACTTTGATCTCAGTCATACTTTGGTAGATATTTCTCCCCTTGTATTCCAATATATCCACTTGTGTATCTCAAACCTAATTGAAATGGTTGGTATGATGAGAAGCTGGGCTCTCCTGACCTGGAGGAGCTTACTGGTTTCTATAGAGCTTTTCCCATCcctgggcgccgaagacgtggatgtcgattaaggcagcccccgcacctctctgattcagaggggttgggttaaatgcggaagacacatttcagttgaatacattcagttggacaactgactaggtatccccctttccctaaggATGACAACATGACTATATAGTATCTCATTTACTGATTGTCACTCTTTGTACCCTTAAGTGAGCCAAATACACATGATGTGAAGCACTAGTATATATAgtctattataaactgggtggtttaaaccctgaatgctgattggctgacagctatGGTATATCAAACCGATtatcacgggtatgacaaaacatttatttgtactgctctaattacgttgttaaccagtttataatagcaataagacaccttGGGGGTTGGTGGGGAGTTGgtggtaaatggccaatataccaaggctaagggCTATATCCAGGCACGCTTTGcgtcgtgcgtaagaacagcccttagccgtggtatattgtccatataccacacccccttgggccttattgcttaattaccCATCATCTTAAGAGTATAACAGAAGCGGAGCATGTAACTGTTGTTTTGTTTCCCTTGAAGGGAATGTATTGAGAGCACTAGAAAAGTAACACGTCCTACAAGCCAAGGAGAcctagtagaggagagggtaggagagaagtTTGCACGTAGAAGAGACTTGAAGATGAGAAGGATTGGTATTTTCTGAATGTGTTTGAGCCCTGGTCCCTGGTGGCAGAGGGACCACTGGAACGGGACAGGGTTCAGAGAAGAGTAATGTTGGATTGGCTAGTGGGAAAAAAACGAGTCCTCCTTGGTTGATAGACttcaaatgtaatgtaatgtgctGTAATGATTCATGCGAGACTGGCTTTATAGTGCCACTTCCTCGCTGCCTTCCTACAGAGGTGTCTCAGAGTCTTTGTGTCAAAAATGAGTAATGCCATGTTAGTACAGGATGAACAGAATGTGCTTTGTGAGACCTGGTTCGCTGAGAGGTTAAAACCAAGCATAGGTACTGCTGCTCTTTCAATGCTGTGCTCATAATGGTCCCACCGAACCAGAATCTAAACCAGTGGCCTCATAAACCACATAGTCAACTGGGCCCATTCAATCTTGAATCCTCTTACATTTCTAATTGACAAGATGTTTTTTAGTGGCAGTAATTGCTATTTAACGCAACTATGTAATGATTTTGCAATGCAACTCTTATTAGGTACTGTTGTGATGTCTGCATATAAATACTCTCTGCTGTGACTGACTGCCTAGCTGTCTCCCCTGTTTGATTTTATGTCTTTGGTCTTGTGATTATCTTGCTTCACATTGCATGTTAGTGAATGCCTCGCTATCCTTTCCTCTTTCTATTTAAGTATTCCCACTTAACAGTAAAATGAACTTGACCATAAGGTGCTATAATCAGGCCCCCTTTTTATTTATCGTGTCGTGTTTCACCTTGGGATCACTTTGACTTCACTCTTCTATTCCTTTGTAATTACAGGGTCAATCCAGATGGCAGTCATCAGTGGTAGAGGGTTTTGAAGATTTGATATATTGCCTCTTGTTGCACAAAGTTTACTTGATTTAGAAAGAGGTCACCTCTATTCAGGGGGGTGTTATAGGATGTTGACTGAAAAGCTGTTGGGTGCAGATGTCTCCAAGTCATGTTTTACATGGCACAGTTGGGAGCCTAGACCTTTCATATTACTCCTCAATTAATATTCCAACCTCTTCTCCAGCACGGCAAACATTTAGAAAATGAAGTAAAATTGAAAAAAGACTTACTTTGGTTAAACAAATGTTTATATGGACAGCACACTGGGAAAAAATGACACATTTGTATTAATATTTGATTGAGTTGTCAGAAAACATGAATTCAAATCGAAATCAACCAAACCTTGTTGTTGATTTTGTAGTTGGAACCTGGGTTAAATTTAGAAATCGGAAACATCTATCAAAGAGCCATGTCGATGCAATGTTTACATTATTGGAACAACGTAGTCTCAAACAATGTTTACATTATGGGAACAACGTAGTCTCAAACAATGTTTACATTATGGGAACAACGTAGTCTCAAACAATGTTTACATTATGGGAACAACGTAGTCTCAAACAATGTTTACATTATGGGAACAACGTAGTCTCAAACAATGTTTACATTATGGGAACAACGTAGTCTCAAACAATGTTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU439069 lncRNA upstream 67670 29070812 ~ 29073163 (+) True G386606
TU439028 lncRNA upstream 145710 28994145 ~ 28995123 (+) True G386568
TU438991 lncRNA upstream 175185 28961817 ~ 28965648 (+) True G386537
TU438960 lncRNA upstream 209902 28927816 ~ 28930931 (+) True spag8
TU438898 lncRNA upstream 287682 28852880 ~ 28853151 (+) True G386445
TU439295 lncRNA downstream 7838 29174348 ~ 29174799 (+) False LOC110523576
TU439294 lncRNA downstream 21111 29187621 ~ 29187912 (+) True LOC110523576
TU439304 lncRNA downstream 30377 29196887 ~ 29197098 (+) True G386814
TU439305 lncRNA downstream 30621 29197131 ~ 29197363 (+) True G386815
TU439344 lncRNA downstream 110291 29276801 ~ 29277657 (+) True G386846
XM_021602378.2 mRNA upstream 5350 29133844 ~ 29135483 (+) True tmem141
XM_021602377.2 mRNA upstream 19606 29116491 ~ 29121227 (+) False LOC110523572
XM_021602376.2 mRNA upstream 19606 29116493 ~ 29121227 (+) True LOC110523572
XM_036977216.1 mRNA upstream 43491 29089525 ~ 29097342 (+) False coq4
XM_036977220.1 mRNA downstream 7809 29174319 ~ 29187968 (+) False LOC110523576
XM_036977221.1 mRNA downstream 7809 29174319 ~ 29187968 (+) False LOC110523576
XM_036977222.1 mRNA downstream 10108 29176618 ~ 29187968 (+) False LOC110523576
XM_036977219.1 mRNA downstream 10109 29176619 ~ 29187968 (+) False LOC110523576
XM_036977223.1 mRNA downstream 10112 29176622 ~ 29187968 (+) False LOC110523576
TU438959 other upstream 209902 28926277 ~ 28930931 (+) False spag8
TU438217 other upstream 723278 28416605 ~ 28417555 (+) True G385805
TU437511 other upstream 1236102 27904467 ~ 27904731 (+) True G385171
TU437387 other upstream 1433755 27706714 ~ 27707078 (+) True G385053
TU437362 other upstream 1457440 27675352 ~ 27683393 (+) True LOC110522888
TU439971 other downstream 575290 29741800 ~ 29746194 (+) True tbx5a
TU440079 other downstream 730476 29896986 ~ 29898134 (+) True G387516
TU440680 other downstream 1120441 30286951 ~ 30287824 (+) True G388019
TU442960 other downstream 2793845 31960355 ~ 31960745 (+) True G390184
TU443183 other downstream 3053671 32220181 ~ 32220533 (+) True G390393

Expression Profile