RNA id: XM_036977223.1


Basic Information

Item Value
RNA id XM_036977223.1
length 4599
RNA type mRNA
GC content 0.48
exon number 14
gene id LOC110523576
representative False

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 29174319 ~ 29187968 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gagagtgacagagagaaatgGAGTGAAAGTTTAAAATGGAGGGAATAGGTGTCCAGTATTTGAAAAATTTCCACATGAACCTACTTTTTATGACAGTGCAATTCTGAAGACTTGAGGCTTAAAATGAGGCTTCACATGAATCGTTACCAAAATGCTGTGTTTAAATCAGATAGTGTCCTTGGTATGGATCAACAACATACTACTGTAtatcttcactgatattttcaggGTCTGTCCATGGACAGTGACATACATTTACGTACATGACATGAATGTACATTGCGATAGCTCAGGTTCATGGTTAGCAGTAGACATGAATATTCATGGCATCTGTTCACACCCCAACCCTCtggctctcaatctctctctctatctttgctctccaccttttctctctctccctctctctcattcggAGAGAATACTCTTCTGTGGTCAGGAAGTAAATGCGCCTCTTTAATGTTTCAACAAAAGTCATTGCAAGGCGCGTCCGCCATGCCACGCCAAAAGAGAGTGCAGTAAACAGGGTTAATAAAATAAATGAACAGTGTTGGGTATACAGAAGTGAATGGGCAGCACCCAAAGCTGTAACCAACCACAGGAGTCTACCATGACAGCATCATTGTGACCTAATTCCGAGATGGATAACCTGCCCTGCACAGAGTAATGAGACTGAACTAAGCTGAACCGTATCTCTCTGCTTAGGACTGAGTGAAGAGAGAGGTTATGGAGGAGGCTATGGTGTGCTCTCCTCTCCCAGACCTCAAGCAGCCAAACAGCCAGACATGCACCTCCTTGGAGCTCCTACCACCGAGCAGGCCCCTGGAGGAGGCTATTCggtggggagagatggagaagcaGGTGAATGAGGCCGACAGGGAGAAAGAGGACAACTCTCCTCAAACTGGAAGGATCTCTGAGGAGCCAGAGGAGCATTGGGACTCCATGACTTTACCCGTGTACCCCATTACCTGTCCCAGTGTCCTTCTGTCCTTTGCCACAGTGCAGTGGGACATGCCTGACCTTTCCCCTGACACACCCTTCCCCATGACTGACAATAGCTTGGCCGATGAGCTGGATTCCAGTGGAGCAGCCAGTCTGGACTGGACTGTGAACCCGCTGtcccttcaccaccaccaccaacagcaGCAGCATCAATCCTGTGTGACAGGGATAAACATAGAGCTGTCTGTCCAGGAGAAGACAGAGAAGCACAATAGACCGGAACAGCAGTTGCCTCTGGACAGTAAAAACTCCCATCCGGCATGTGACACACCGAGCCCAGATGTGGAGGCTTCAGCACAACAGCTATTTGAGGAACATGACTCTCTTTCAGAAAGCTCTCGGcggcaggagacagagaaagagatgggacagcCTGTGACAGAAGATACTATCCcaccctctgacagagctcctagCCCTGTACAGACAGGAGAGTCAGAGACTGGGCAGGATAGTGAGAGTCTAGACTCTGTACTGGGAGAGGAACAGGAACAGACTAGCATAGTGCTAACAATAACGATCAATTCAGAGCAAGGATCAAGTTCTGCGAACTATGAGGAGAAGGAACAGGCTGTAACTAATTTAGTTTATAATGGAGATTGTGACGAGCAGACAGAACAGACCGAGCAGTCAGAGGGGAGGGAACAGTCAGATAGGGAGCTGGAATCCGAGACTATAGAACTCGTAGAGCACCTGTTTGAGCCAGCTGAACTGAAAGAACAGTCAGAACTCACAGAGAAGTCTGAACACAGTTGGCAGTCAGAGCCTAACCACACAAAACAGAGTGAATACAAAGACAACACCAAGACAACAGAGCAGCCAGAAGAGTCTGAGCAACTTGTAGAGTCCGACCAGGTAGAGCATTCAAATCAGTTAGGGGAGGAAGAACAGCAAACTGAAGAGACCCGTTTACAACAGGCAGAACAATCAGACAAGATAGaccagtcagagtcagagcagACAGAATGTTTAGAATCAAAACAATTGCAACAGACACAACATTCTCAACAAACAGTGCACTCAGAGCAGACAGAATTTTCAGTGCAGACGGAACCACAGACAGAACCATCGCGGGAGATGGAACACTCAGAAGATTCTGACCAGTCAAAACAATCAGGGGAGACGGAACAGTCAGAGCAGACGGAACAGTCAGATCAGACAGATAACAAACCAGTACATTCAAAGCAGTTAGATCTATGTTTCCATTGCACAGAGGAACTTGAACAGTCAGACCATACAGAAGaacagaaacagtcagagattGAACAGCCAGCGCAGACTGAACTGACTGAGTTGACAGAAGAGGATGCGCAAACAGAGCATTCCAAGCAGGTAGAAGAATTGGAACCAAAAGAGTATAAAGAGGATTCATGTTTGCCGCCCAGGGAAGGAAGTTTAGAGCAACTGGAGTCTCAGGTACAGCAAACAGAGGCCTCAGAACCAGTGGTGGTCCATATGAATGGTGGAGTTTTGGACAGGGAGAAGGCCTGCAGGCTGGCTGAAAGACTCTACAGGCTGGATGGGATCCACAAGACAGATGTGGTCAAACACCTAGACAAAGACAATGGCTTTAGCCAAGCTGTTGGGCAGGAGTACCTCAAGTTCTTTGACTTCACCGGTCAGAGTCTAGACCAAGGCCTGAGGTCTTTCCTGAGGGTGGTGGTGCTGATCGGTGAGACccaggagagagagcgagtacTGCAGCATTTCTCCTGCCGCTTCCAGCAGTGCAACCCTCACACCTTCTCCTCTTCAGGAGAAGTACTCACACTCacctgtgctgtgatgcttctgAACTCTGATCTGCATGGACAGAATGTGGGTAAAGCCATGTCTGTGTCCAGCTTCGTGTCCAACCTGGATGGGATGAATGAGGGTGAGAACTTCAGCAAGGAGCTGTTAAAGGCTCTCTACAACACCATTAAGAATGAGCCTCTGGAATGGGCAGTTGATGAGAAGGAACTGAAGAGCTCCATGCTGTTGGTGGAGGACGCTAAAGAGGACGCACCCTTGCGCTCCAAGAGCAACCCGTTCCAAGATGTGCCTCATGACAAGAAGGCCACAGTGTTCAAACAGGGCTTTCTCAAACGCAAGGCCCACGCTGACATCGATGGCAAACGCACTCCTTGGGGGAAGAGAAGCTGGAAGACCTTCTATGGAGTGCTGAAGGGAATGGTCCTCTACTTACAGAAGgatGAGTATAATATGGAGTGGCAGAGTACAGAGGAGGTGGTCAGTGTGCACCATGCCCTGGCAGAGCAGGCAGCAGACTACACTAAGAGACCACATGTCTTCCGTCTGCAGACTGCCGACTGGAGGGTCTTCCTCTTCCAGGCCTCctccacagcagagatgaGTTCATGGATCAGCCGTATTAACCTGGTGTCAGCCCTGcactcttctcctcccttccctgcTGCCGTGGGCTCTCAGAGGAGGTTCTGCAGACCCATCCTGCCTGCCTCCCAGTCTGCTCACACACTGGAGAGACAGCTGCAGTCCCATGCTCGCATGCTGCTGTCCTTCCAGGAGGACCTGGCCTACCTGCAGCAGAGTCTCCCTGAGAGCCGCAGGGCCAAGGCCAAGGAGCTGGAGGAACACCGTGTCAGAGAGGAGTACCTGCAGCATGAGAAATGTCGCTACGAGGCCTACATCCAGATGCTGGAGGTCTGGAAGGGTTTGAATCAGTCAGTCGACACTGAGGTGGGAACCAGCGAGCTCAGCCTGTTtgacagagctgtgtgtaaggaCACAGTggatgaagagggagaggagggaaccCTGAAGAAGTCCCACTCCAGCCCCTCCCTGGATGTGGAGATGGCCTTGCCCCACGTGGTCAAAGTCAAACGCAACATCTCGGAAAGACGGACCTATCGCAAGATCGTCATACCTCGACGCAACCGGGACATATGAGAAAAGGTGCCCAAAAGGGATTAAAATATGACTCTTACCATGAGTTTTTAAAGGGCTCCTTTGAGGACATAGACACAATGTGTTACTTCTAAGCACTGTCCTTTTCGTTTTCATTTTCAGCAAGAAAGCAAAAGTCATCAAAACAGAATTAATCAATCTCAGGGATCTTGCTTGTGTCATTTTCTTTGTTATATTTGCTTTACATAAAAGTATTTAATTAATATTTGTGCACTTTCTATTGAACAAAATGAATTAAACCTCAGAAGTCAATGCTCCCTGCTGAGACAGGTCAAGAAGAGTGATCATGTTTGTCTCTGAATGATTTAATTCCCTTTAAAATGCACATGAACATACCTACCCCTCTGAATTTCCTGTGATATGTTGAGATTCGTGTTTATTTCTATTAGAAATGTGTCTCTGCAGTTACAAAATGTTACTTGTCTGCGCCATATGGTCTATGTATGCAGTGTGCAATTGTAACCTCAAGAGGGTGCTATACAACAACATATTACACATGAAGGCATGTACAGTTTGAAAAATCATCAAAATTATGTCAATATGCTCATTTTAGTTCTTGTATCTTTTATGTCATTTCATATAAACATATTTGGATTGCATCTCCATGAAAGACTAACACTACCATAATATTACACTATAAGTATCACAATTATTTTCTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU439295 lncRNA upstream 1823 29174348 ~ 29174799 (+) False LOC110523576
TU439069 lncRNA upstream 103459 29070812 ~ 29073163 (+) True G386606
TU439028 lncRNA upstream 181499 28994145 ~ 28995123 (+) True G386568
TU438991 lncRNA upstream 210974 28961817 ~ 28965648 (+) True G386537
TU438960 lncRNA upstream 245691 28927816 ~ 28930931 (+) True spag8
TU439304 lncRNA downstream 8919 29196887 ~ 29197098 (+) True G386814
TU439305 lncRNA downstream 9163 29197131 ~ 29197363 (+) True G386815
TU439344 lncRNA downstream 88833 29276801 ~ 29277657 (+) True G386846
TU439428 lncRNA downstream 107210 29295178 ~ 29295389 (+) True G386918
TU439470 lncRNA downstream 176744 29364712 ~ 29364984 (+) True G386959
XM_021602380.2 mRNA upstream 10112 29140833 ~ 29166510 (+) False LOC110523574
XM_021602381.2 mRNA upstream 10112 29140833 ~ 29166510 (+) True LOC110523574
XM_021602378.2 mRNA upstream 41139 29133844 ~ 29135483 (+) True tmem141
XM_021602377.2 mRNA upstream 55395 29116491 ~ 29121227 (+) False LOC110523572
XM_021602390.2 mRNA downstream 66670 29254638 ~ 29262641 (+) False LOC110523578
XM_036977228.1 mRNA downstream 67062 29255030 ~ 29262641 (+) True LOC110523578
XM_021602393.2 mRNA downstream 116369 29304337 ~ 29311723 (+) False mtfp1
XR_002473468.2 mRNA downstream 116369 29304337 ~ 29312328 (+) True mtfp1
XM_036977231.1 mRNA downstream 153310 29341278 ~ 29446180 (+) False LOC110523581
TU438959 other upstream 245691 28926277 ~ 28930931 (+) False spag8
TU438217 other upstream 759067 28416605 ~ 28417555 (+) True G385805
TU437511 other upstream 1271891 27904467 ~ 27904731 (+) True G385171
TU437387 other upstream 1469544 27706714 ~ 27707078 (+) True G385053
TU437362 other upstream 1493229 27675352 ~ 27683393 (+) True LOC110522888
TU439971 other downstream 553832 29741800 ~ 29746194 (+) True tbx5a
TU440079 other downstream 709018 29896986 ~ 29898134 (+) True G387516
TU440680 other downstream 1098983 30286951 ~ 30287824 (+) True G388019
TU442960 other downstream 2772387 31960355 ~ 31960745 (+) True G390184
TU443183 other downstream 3032213 32220181 ~ 32220533 (+) True G390393

Expression Profile