RNA id: XM_021602393.2


Basic Information

Item Value
RNA id XM_021602393.2
length 3063
RNA type mRNA
GC content 0.41
exon number 4
gene id mtfp1
representative False

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 29304337 ~ 29312328 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CCCTCGGTGTGGCGCATTGCAAGACTTGACTCGCAGCTTCTAGTTGGGACTCTATCTACATGGGGTTAAAGACGAAGCATGGATCAAATTCAAGAAAAAACAAGCAAGGAGGTCGATATTTATCGTGACACATGGGTCCGCTTCTTAGGCTATGCCAACGAGGTGGGAGAGGCCTTCCGTGCCCTGGTGCCAGTGAGTGCTGTATGGGCCACATATGCAGTTGCCACCGTGTATGTTTCCGCTGATGCTGTGGACAAGGGGAAGAAGGCTGCCGTGGAGCATGGTGACAACCCAGGGAAGACAACCAAGGTGGCTGTAGCAGTGGTGGATACGTTTGTATGGCAGGCCCTGGCCTCGGTCGCTATCCCAGGCTTCACCATCAACCGTGTGTGTGCCGCCTCTCTTTACCTCCTGGGCAGAACCACGCGCCTGCCTCTCTCCGTACGCAAGTGGACCACCACGGCCATCGGCCTCTCCACCATCCCCTTCATCATCCACCCCATCGACAGGGGAGTGGACTTCCTGCTGGACTCCAGCCTGCGTAAGGTCTACGGTCAATCTGCAGGAGAGAGGCATGACTAATAAGCACCACGACCACCCTGCAACCTGGTCCTAGTGTCCCTGGCCCGGACAGGTTAGCTCCACCAGGAAATTGACCCCACCCACCCTCTGTCCCAGACAGCACTTCCTCCCAAGCCATCTGAAAACTCTGCTGATCACTCTACTGTAACATCACTGTGAAGCACAAAGCCAATACAGCAGGGTTACTCCACTCCAGTTCTCCAGGGCCACTGTACTGTCTGCCACTTGTCTATGCCCCTCTGTTTATTCCCATCTTTTCATTTTAAACTCCAAGTTAGGGGGACCTATGTTTCTTTGGCCAGTCAATGACTTAGAATCAGGGAGAAAAGGGATCCAATAGACAGTGTTGCCCTCCAGCACTGGAGTTGAATACCTGTGGCTGCTACTGGCCTGCAGAGCCCACCTGTTCATTTTCAGACCTCCACTTGGCATGTATCCAGGTAACTCTTGATGTTAGCCATATTTGGGAATATTCGGGTCACTGTCCTTAGACCTGGCATTAAGGCCCTATTTTCATTACATGTTAACATCTacctttgtttttgtttatttctgCCTCAAAAATAATGTCTTGTACGGTTGTCTGTCACTTTGAATAGATATTTACAGAGTATATTGTGATGCACTTCAATGTTCAGTCTTGAGATTAACCTGAGTGCTTCTTGTCATTTATTACAGAGGTGAACTGAATAGATGTAAGAATTCTTGAGGTTTTGGTTGGCTCTAAAGATTCAGTTACTTTGGTAGCATCTAAGGCATAGAAAGTACTGTAATAGTTGTGTAACATGCCCTATGCAGAATGCATATGAAGGGAATATGCATAAAATACTGTAATTATTGCCAAATATTTAGGCTACTCTGGAAGAGAACCCATCAGTATACAAAGCTGTGCTGCAATATGCAAGGAATCTGAGTCATCTTATTCAAAAATGGGAAATGCTATTGGAATATGTAAATCAGGGCGCTCCAattctgttcctggagagctactgttgTGTATGTTTTTGCTCCAActctaatctagcacacctgattctaataattagctggttgataagctgaatcaacTGGGGTTGGTTTTAAAAcaggttggagagccctgatgtaaaTTAATGTGATATACTTAATTGGGAAATGTTGCCAATTGTTCATACACCAGAACAAATATTTAGCAATACTTTTCATTTAACTTCTCAGTTATAAGTCAACTTCTGTATATTTAATATATTGATTACTTAAAAATGTTTTGTCACCAAAATGCAACATTTTTGTGATATGTTtgaatttttttttctaattattTCCCCACTTAGTCACATAATCAATTTCATATTTCGATATCAATATATTTTCATGCTGGAAACAAGGGAATGTTTAACTGTTGTTAATTTCATAATATGTTTGTTTTAGACTTAAAATTCAAATATGTTTTCAAACCTGCTACTGATGTACATGTACATTTTCTTTTAGTTGTCAGAGAAATTGAAAAAAATGTTCTTTGACAAAATGATAGTAATTTATCATCGAAAGTGAAAGTAATACTGCAATGGGCAGCTATTTAGCTATCCCCTACTCTGAaactgtttaaaaatatatactgtagaaaAACAATATCCTgtattgtatacattttttttttcctgtGCAAACAATTGAACATATTCAACATGTTTTTAAGTTTATCAGTGAGAATACGTTTCTTCATATGTATTCATTTGACACTTGTTTAAATGAAACAGCAACCCCTCATATGCAGCCAAAACACTGTCGCAAATACCCGTAATGTACTTGAACCTTCATAAATCCATACCACAGTACAACATTCCTCATGCTGTGGTGTCAGAAAAAAAGGAGTAACTATGGATGTGTTATGACACACTCATTGGCAACAAGTAGCACAGAACTGTCTCAGTAGCGTTCCTCTGGGGAATATGATTGACAACTCTCACAAAGAGATATTGTTGTGGAATTGTGTTCGTGGTTTGACAATAAGGTCTAACAAGTTGTACAAATTGATGTATTGATTTTAAACAACATTGCACATATTTTTCTCAATGCAGCCAGTCACAGCTTTTATTCCCTGTAGATTGTACGGCCACAACATACATTTACCAATAAAATGCCCACAGTGCCACTGTCAAAGCCAATCACATCAATGACCTCAACGAGCCAAGATTCTAGTTTAAGAAATTTGTCGTGATTGAGTAAGTGATCCACAGCTGACAGCAATTATTTTGATTAGGTGCATTAGCTCATAAAAAGTCCAGGTGGTCTGAGTGCTGGCATATTGTCAGAAAGATGTTGTTTATCCACAGTGTGCTGTTCTTGATGCTTGTGGCCACAGCTGTGGCCCAAACAGGTATGCTAACATATTTGATAACTTGCTAAATGTTTGTGTAAGGTCTGCCTTGAAAATGTTTAAAGTTTGGATTCATTTTAATTTTGCTAATATGGAAACCAATTAAAAGTTGGACAACATTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU439428 lncRNA upstream 8948 29295178 ~ 29295389 (+) True G386918
TU439344 lncRNA upstream 26680 29276801 ~ 29277657 (+) True G386846
TU439305 lncRNA upstream 106974 29197131 ~ 29197363 (+) True G386815
TU439304 lncRNA upstream 107239 29196887 ~ 29197098 (+) True G386814
TU439294 lncRNA upstream 116425 29187621 ~ 29187912 (+) True LOC110523576
TU439470 lncRNA downstream 52989 29364712 ~ 29364984 (+) True G386959
TU439473 lncRNA downstream 55834 29367557 ~ 29367678 (+) True G386962
TU439475 lncRNA downstream 65357 29377080 ~ 29377290 (+) True G386964
TU439476 lncRNA downstream 65971 29377694 ~ 29377939 (+) True G386965
TU439484 lncRNA downstream 75547 29387270 ~ 29387475 (+) True G386973
XM_021602390.2 mRNA upstream 41696 29254638 ~ 29262641 (+) False LOC110523578
XM_036977228.1 mRNA upstream 41696 29255030 ~ 29262641 (+) True LOC110523578
XM_036977220.1 mRNA upstream 116369 29174319 ~ 29187968 (+) False LOC110523576
XM_036977231.1 mRNA downstream 29555 29341278 ~ 29446180 (+) False LOC110523581
XM_036977232.1 mRNA downstream 31143 29342866 ~ 29446180 (+) False LOC110523581
XM_036977233.1 mRNA downstream 31143 29342866 ~ 29446180 (+) False LOC110523581
XM_036977234.1 mRNA downstream 31143 29342866 ~ 29446180 (+) False LOC110523581
XM_036977235.1 mRNA downstream 31143 29342866 ~ 29446180 (+) False LOC110523581
TU438959 other upstream 373406 28926277 ~ 28930931 (+) False spag8
TU438217 other upstream 886782 28416605 ~ 28417555 (+) True G385805
TU437511 other upstream 1399606 27904467 ~ 27904731 (+) True G385171
TU437387 other upstream 1597259 27706714 ~ 27707078 (+) True G385053
TU437362 other upstream 1620944 27675352 ~ 27683393 (+) True LOC110522888
TU439971 other downstream 430077 29741800 ~ 29746194 (+) True tbx5a
TU440079 other downstream 585263 29896986 ~ 29898134 (+) True G387516
TU440680 other downstream 975228 30286951 ~ 30287824 (+) True G388019
TU442960 other downstream 2648632 31960355 ~ 31960745 (+) True G390184
TU443183 other downstream 2908458 32220181 ~ 32220533 (+) True G390393

Expression Profile