RNA id: TU439934


Basic Information

Item Value
RNA id TU439934
length 700
lncRNA type read_through
GC content 0.44
exon number 3
gene id LOC110523583
representative False

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 29712928 ~ 30103090 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ggggattcgatttcgtaacctttcggttactggcccaacgctctaaccactaggctaccggcaGCTACCTACAAATATTTATAActttgatttatttcagattacACAATTGAAAATCGACCATAATCCCTTTGCCAAAGGATTCCGTGACACTGGCAATGGAAGACGAGAGAAGAGGAAACAGCTGGCCCTGCAGTCAATTCGCTCATATGAGGAGCAGCAGAAAAAAGAGAACGGAACGTCCGACGACTCCTCCGGCGAGCAGGCTTCATTAAAATGTTTCGACCAGGCCTCGTCTCCCGCAGTGTCTACCGTGGGGCCTCCCAACCTGAAAGTTATGATTCTTGAATTTCTTCTGGAAACCCCCATCCTGAACCTGTCGAAGATGCAAAGAGAGCAGTGTTACTAATTACAGTAATTCAACAACCACATGCAGACCTGTTTGCTTGGAACACTGCTCAACACTACTGGTGAAAAAAACAGTTCCACGAGGGTTAAGCCATCTGACCTTCTTGCGTTTCTGTGGCGCCTGTTTATCAATCTCCATCTCCTCATCATCTGTTTTAAAGGCATCTTTTTCCTCCTCCATACCCTCTGTCTCCTTTTTCAGAGAGAATAAAGTGGCTGTAGGTAAAGAAAAAGCCAGACATTAGTTTTCACCTTCCAGAAAGGAAGCAAATGTAAGAAATAAAATATACTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU439953 lncRNA upstream 5105 29711764 ~ 29711963 (+) True G387406
TU439952 lncRNA upstream 5359 29711303 ~ 29711709 (+) True G387405
TU439948 lncRNA upstream 10945 29705884 ~ 29706123 (+) True G387401
TU439946 lncRNA upstream 13115 29703734 ~ 29703953 (+) True G387399
TU439942 lncRNA upstream 21375 29695449 ~ 29695693 (+) True G387395
TU440218 lncRNA downstream 2288 30105323 ~ 30112442 (+) True LOC110524747
TU440232 lncRNA downstream 10704 30113739 ~ 30184969 (+) True G387655
TU440235 lncRNA downstream 19660 30122695 ~ 30123495 (+) True G387657
TU440259 lncRNA downstream 66315 30169350 ~ 30169959 (+) True G387678
TU440292 lncRNA downstream 157877 30260912 ~ 30261118 (+) True G387711
XM_036977231.1 mRNA upstream 270888 29341278 ~ 29446180 (+) False LOC110523581
XR_005051713.1 mRNA downstream 2258 30105293 ~ 30108549 (+) False LOC110524747
XM_036977247.1 mRNA downstream 30637 30133672 ~ 30217715 (+) False LOC110524742
XM_036977246.1 mRNA downstream 30639 30133674 ~ 30217715 (+) False LOC110524742
XM_036977249.1 mRNA downstream 30639 30133674 ~ 30217715 (+) False LOC110524742
XM_036977254.1 mRNA downstream 30639 30133674 ~ 30217715 (+) False LOC110524742
TU438959 other upstream 786137 28926277 ~ 28930931 (+) False spag8
TU438217 other upstream 1299513 28416605 ~ 28417555 (+) True G385805
TU437511 other upstream 1812337 27904467 ~ 27904731 (+) True G385171
TU437387 other upstream 2009990 27706714 ~ 27707078 (+) True G385053
TU437362 other upstream 2033675 27675352 ~ 27683393 (+) True LOC110522888
TU440680 other downstream 183916 30286951 ~ 30287824 (+) True G388019
TU442960 other downstream 1857320 31960355 ~ 31960745 (+) True G390184
TU443183 other downstream 2117146 32220181 ~ 32220533 (+) True G390393
TU444420 other downstream 3055791 33158826 ~ 33162980 (+) True G391513
TU444741 other downstream 3257922 33360957 ~ 33361341 (+) True G391805

Expression Profile