Gene
RNA
| Item | Value |
|---|---|
| RNA id | XM_036977244.1 |
| length | 3518 |
| RNA type | mRNA |
| GC content | 0.46 |
| exon number | 8 |
| gene id | LOC110523590 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_048569.1 |
| NCBI id | CM023223.2 |
| chromosome length | 100798064 |
| location | 29859609 ~ 29902923 (+) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| species | rainbow trout (Oncorhynchus mykiss) |
| id | name | namespace |
|---|---|---|
| GO:0006895 | Golgi to endosome transport | biological_process |
| GO:0032880 | regulation of protein localization | biological_process |
| GO:0007264 | small GTPase mediated signal transduction | biological_process |
| GO:0045176 | apical protein localization | biological_process |
| GO:0007589 | body fluid secretion | biological_process |
| GO:0008543 | fibroblast growth factor receptor signaling pathway | biological_process |
| GO:0015031 | protein transport | biological_process |
| GO:0006184 | obsolete GTP catabolic process | biological_process |
| GO:0032456 | endocytic recycling | biological_process |
| GO:0009790 | embryo development | biological_process |
| GO:0030670 | phagocytic vesicle membrane | cellular_component |
| GO:0048471 | perinuclear region of cytoplasm | cellular_component |
| GO:0005765 | lysosomal membrane | cellular_component |
| GO:0005770 | late endosome | cellular_component |
| GO:0030140 | trans-Golgi network transport vesicle | cellular_component |
| GO:0005791 | rough endoplasmic reticulum | cellular_component |
| GO:0005795 | Golgi stack | cellular_component |
| GO:0005829 | cytosol | cellular_component |
| GO:0042175 | nuclear outer membrane-endoplasmic reticulum membrane network | cellular_component |
| GO:0055037 | recycling endosome | cellular_component |
| GO:0000139 | Golgi membrane | cellular_component |
| GO:0031901 | early endosome membrane | cellular_component |
| GO:0097208 | alveolar lamellar body | cellular_component |
| GO:0016324 | apical plasma membrane | cellular_component |
| GO:0003924 | GTPase activity | molecular_function |
| GO:0005525 | GTP binding | molecular_function |
| GO:0019003 | GDP binding | molecular_function |
| id | description |
|---|---|
| K07881 | RAB14; Ras-related protein Rab-14 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU440040 | lncRNA | upstream | 28467 | 29830848 ~ 29831142 (+) | True | G387484 |
| TU439953 | lncRNA | upstream | 147646 | 29711764 ~ 29711963 (+) | True | G387406 |
| TU439952 | lncRNA | upstream | 147900 | 29711303 ~ 29711709 (+) | True | G387405 |
| TU439948 | lncRNA | upstream | 153486 | 29705884 ~ 29706123 (+) | True | G387401 |
| TU439946 | lncRNA | upstream | 155656 | 29703734 ~ 29703953 (+) | True | G387399 |
| TU440140 | lncRNA | downstream | 72456 | 29975379 ~ 29976702 (+) | True | G387570 |
| TU440125 | lncRNA | downstream | 93555 | 29996478 ~ 30003512 (+) | True | G387556 |
| TU440167 | lncRNA | downstream | 129778 | 30032701 ~ 30077928 (+) | True | G387597 |
| TU440218 | lncRNA | downstream | 202400 | 30105323 ~ 30112442 (+) | True | LOC110524747 |
| TU440232 | lncRNA | downstream | 210816 | 30113739 ~ 30184969 (+) | True | G387655 |
| XM_021602422.2 | mRNA | upstream | 96170 | 29741863 ~ 29763439 (+) | False | tbx5a |
| XM_036977236.1 | mRNA | upstream | 136921 | 29712931 ~ 29722688 (+) | False | LOC110523583 |
| XM_036977240.1 | mRNA | upstream | 136921 | 29712932 ~ 29722688 (+) | False | LOC110523583 |
| XM_036977238.1 | mRNA | upstream | 136921 | 29712933 ~ 29722688 (+) | False | LOC110523583 |
| XM_036977237.1 | mRNA | upstream | 138373 | 29712928 ~ 29721236 (+) | False | LOC110523583 |
| XR_005051713.1 | mRNA | downstream | 202370 | 30105293 ~ 30108549 (+) | False | LOC110524747 |
| XM_036977247.1 | mRNA | downstream | 230749 | 30133672 ~ 30217715 (+) | False | LOC110524742 |
| XM_036977246.1 | mRNA | downstream | 230751 | 30133674 ~ 30217715 (+) | False | LOC110524742 |
| XM_036977249.1 | mRNA | downstream | 230751 | 30133674 ~ 30217715 (+) | False | LOC110524742 |
| XM_036977254.1 | mRNA | downstream | 230751 | 30133674 ~ 30217715 (+) | False | LOC110524742 |
| TU439971 | other | upstream | 113415 | 29741800 ~ 29746194 (+) | True | tbx5a |
| TU438959 | other | upstream | 928678 | 28926277 ~ 28930931 (+) | False | spag8 |
| TU438217 | other | upstream | 1442054 | 28416605 ~ 28417555 (+) | True | G385805 |
| TU437511 | other | upstream | 1954878 | 27904467 ~ 27904731 (+) | True | G385171 |
| TU437387 | other | upstream | 2152531 | 27706714 ~ 27707078 (+) | True | G385053 |
| TU440680 | other | downstream | 384028 | 30286951 ~ 30287824 (+) | True | G388019 |
| TU442960 | other | downstream | 2057432 | 31960355 ~ 31960745 (+) | True | G390184 |
| TU443183 | other | downstream | 2317258 | 32220181 ~ 32220533 (+) | True | G390393 |
| TU444420 | other | downstream | 3255903 | 33158826 ~ 33162980 (+) | True | G391513 |
| TU444741 | other | downstream | 3458034 | 33360957 ~ 33361341 (+) | True | G391805 |
