RNA id: XR_005051713.1


Basic Information

Item Value
RNA id XR_005051713.1
length 2800
RNA type mRNA
GC content 0.41
exon number 3
gene id LOC110524747
representative False

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 30105293 ~ 30112442 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CAGTGTTTCATCATCAGTCATCTGACACTAAGTGACAGGCTGCGGTTGTTAGCTAGCAGTCCAGCTAAGTCCAATTTGTGCATTATGATGTAGTCCTTTTTAGGTTTTTGTTTTCCAGTAGAATATTATAATAGAAACCCCTACTATATGTGAAGTGCACTGGTGATGAACATAGTAATTGTAGCTAATTCTACGTAAACAACAATAGGGAGAAGAGCGCTCGGCGGAAATGGAGTCCCTAGAGAAAGCTAGAACAAGATGGGTGTCAGGAGTGGGGCAGCAGGAGGAGACCTATACTTGGAAaacggaggaggaatggagggaaaaagaTAGGGCTTGTGTCGGATAAAAATTGTGGGAAAGGGGAGATGGTTTGTTAAAtaagaatggtagaaagtgtaagcagggggagctgaagacaggaggagaaatggaagtgaataAGTGTGAAGTATCCTATGTAGTAGGTTCGGTGAAGTTATTGTATACCGAGGTATGCACCGAGGATCAGGATGAAGAAGAGTCTGGCAGTAGGAGTGAAGTTTATGGAAAAAAGCGTACTCTTCCCTTTTtgctgatccatttgtggtttcacgGTGGGTGAAAAAAATTGTTGGGTGATGGTAACTAGAAATAGTCTAGTGATAACTGTTTGTGTTTTTGTGAGGCAGAGGGAGAATACGCTTGGAGTAAAACTAATGAGGGCAAGAAAAGTGAATTGTTTCGTTCTCAAGAAAAGGGCACAAATGAAAGGAGTGATAACAGGGGTAGCAGTAAATATAAAAGTTGACCAGCTGAGGGGAAAGATTCCCGGTGTATGTGATGATCGTCGTTTGATGCGACGCAAACAGGGTGGGGAAACGgaagtcattgtctgttcttttgaagTTGAGTCTTTGCCCGATAAAGTTTGGATATATAAGTAATCCTGTACGAGCGATGTGCCGACTACATTACGACGCTACAGGTGTCAAGTTTATGGGTATGTGGCAGCAGCGTGTAGGAGGGAGGGTCCAAGGTGTGAGaaatgtgcagaagggcatgagacaaaggaatgtgtagtatggGGGAAAGTAGTTGTGTTAATTGTTGGTGTGCCTATGGAGCTGGGGATCATAAATGTCCcttgcgagagaggcaggttgaggtttccagggttagagtagtgcatTAGTTGTCACATTGTACTGAAGGGATGGATCGGAAGTCTCGGgaaaattgaggttgtggtggcagctgcagagaggtatttgggtgtgctagacttgacatcagaagagttacagggtgtgttaagtggtgaCGTCCCATCCTTTCAGGGTGATGGCATGAGGTAGGAGTAAATACATTTaattagtggagtagggtggtgttcATTTAATTTTATATCATTTTGAaattagtgagtgtagtgttagatggtagggtatttatttAGTACATTTGTATTTTTCAAGTGTATAATggagttgtactccagtctagtagatGGCGGTAATGAAACAAATTGGATGTCAACCGCTGTTAAACCTCAGAAGAAATAAACAACAATATGTCTGGACCAAATGGAGATCCTAACATCTCAACTGACGATGACATCATCGACAATGAAGATGAATTCAGAGTATGTAGCCATTAACACTGCTGGATCAGATCAACTCCTGCCTGGAGGACCTGGAGGAACGCAACGACTCACTGAATGACCAACTACATGAACTGTTGGAATCTAACTGGCAGGCCTGGCAGGATTTCAGAGTTCAACTGAGCACTGCTACACCCTCAGGAGAGGATCAACAGTCCCTGGACAAAGATTCTCCGGCCTCTGAAGGGGAGAAGGGCGAAGAGGATAAAGCTGGACTACTCAATGTTACACAAAACAACATTCCACCTACCAATATGAGCATCTTTCCTTTTCTCAAGTGTTCATGTGATAGGATTTTCTCTGTCCCTTTCATGTAGCACTTATGAACCCTCCACTAAACTATACAATTTTAATCGATACACAGCTGTTGAACTTGTAAGATGGTTCCTGCTTAGTTAAGTAAAAGAGCCAAAAGCTGAGTACATTCTCTGTGTTGAAGTGACTAGTTTATGCCACCATCACCACTTACAATGTATACCAATGTTTCAGTTTAGCTATCCGTATAGTCAATTGCCCCCATGATTAGTACTTATTTATCCATGTGCTTGGTGTGGGGTGTAAAGCATGCAGAATACGCTGTGATTCATGTCAtaactggggtgtattcattttgCCGAATTGGTTTCTGttccaaaacgttttgcaacgaaaACAAGTTTCTATTgcacaaattcaggtaggtccctccgtTTCATTTGCTATGTTTGGCTCTAAGATGGTAAACAGTTTCTGTTGTAAAATGTAATGAACACACTGGTGGTAGGTAAGCAGCTAAGTTAATCTCTATGGGGTAATACTACAAATCATATGTGAGCTTTGATTGGTCAATATTTTTCTGTGACACGCAAGAAGAGATTAATGTGTTTGTGTTCCACTTCTTTCCAATTCAGTTTTTCCTTGTCAGATTTAATAACAGTATATTGAATGTGTTACTGTTAATTATCTGAGTGTGACATCTTGAATCACTAGCGTCAAGAACTAGCTCTTTAAAACAATGCGATATTCAATAATCACAGTGAGGCAATTGTCAAATTTTATTATAAATTAAAATGACCCCAATACAGAAAACATCCCAAAAATACATGAAACTTCCAGCTGCTAGAAAACACTTGTTCATCGGTTTGTCATTTGTAGAATAAAAATACATTAAGAAACATA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU439935 lncRNA upstream 2203 29717068 ~ 30103090 (+) True LOC110523583
TU439934 lncRNA upstream 2258 29717068 ~ 30103035 (+) False LOC110523583
TU440167 lncRNA upstream 27365 30032701 ~ 30077928 (+) True G387597
TU440125 lncRNA upstream 101781 29996478 ~ 30003512 (+) True G387556
TU440140 lncRNA upstream 128591 29975379 ~ 29976702 (+) True G387570
TU440232 lncRNA downstream 5190 30113739 ~ 30184969 (+) True G387655
TU440235 lncRNA downstream 14146 30122695 ~ 30123495 (+) True G387657
TU440259 lncRNA downstream 60801 30169350 ~ 30169959 (+) True G387678
TU440292 lncRNA downstream 152363 30260912 ~ 30261118 (+) True G387711
TU440293 lncRNA downstream 152588 30261137 ~ 30261674 (+) True G387712
XM_036977244.1 mRNA upstream 202370 29859609 ~ 29902923 (+) True LOC110523590
XM_021602422.2 mRNA upstream 341854 29741863 ~ 29763439 (+) False tbx5a
XM_036977236.1 mRNA upstream 382605 29712931 ~ 29722688 (+) False LOC110523583
XM_036977247.1 mRNA downstream 25123 30133672 ~ 30217715 (+) False LOC110524742
XM_036977246.1 mRNA downstream 25125 30133674 ~ 30217715 (+) False LOC110524742
XM_036977249.1 mRNA downstream 25125 30133674 ~ 30217715 (+) False LOC110524742
XM_036977254.1 mRNA downstream 25125 30133674 ~ 30217715 (+) False LOC110524742
XM_036977258.1 mRNA downstream 25125 30133674 ~ 30217715 (+) False LOC110524742
TU440079 other upstream 207159 29896986 ~ 29898134 (+) True G387516
TU439971 other upstream 359099 29741800 ~ 29746194 (+) True tbx5a
TU438959 other upstream 1174362 28926277 ~ 28930931 (+) False spag8
TU438217 other upstream 1687738 28416605 ~ 28417555 (+) True G385805
TU437511 other upstream 2200562 27904467 ~ 27904731 (+) True G385171
TU440680 other downstream 178402 30286951 ~ 30287824 (+) True G388019
TU442960 other downstream 1851806 31960355 ~ 31960745 (+) True G390184
TU443183 other downstream 2111632 32220181 ~ 32220533 (+) True G390393
TU444420 other downstream 3050277 33158826 ~ 33162980 (+) True G391513
TU444741 other downstream 3252408 33360957 ~ 33361341 (+) True G391805

Expression Profile