RNA id: TU444848


Basic Information

Item Value
RNA id TU444848
length 1666
lncRNA type sense_over
GC content 0.38
exon number 1
gene id LOC100136128
representative True

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 33640488 ~ 33799714 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTATTATAAAGGGGTGGTTAAACCCTGTCCTGGAGGACAGCAGACTGCTTTGGATTTCAATCAACTTTATCAGAGATCCAGGAGCGAGTTTGGCAGTCCACATTATGATAGCAGACTAGGGAGAGCCACAGAGAAATAGAATAGAACATTTGCTTTGCGATAGAGAGTTTGACCAGCGAGAATAGAGAATTTGGTGACTATGGGAGAGCTGTGACTTCCCCCTAGTGGAAGAGATGCAGCACTGCAACATTACTTGAATTTTGTACAAGTATTTAACCAGAAATGGCACTTTTTCATGACATTATCAATGTTCATTTTTGTCTTTGGTCAGTCAAAACCTCAACGTGTTTGCTCGCAGAAAGATTGAATGAATAACAATAACCTCAGCAGGATTGATTGACACGTCCTTACTTCAAATCTAGCTTGTGTATTTCAGTGCGGTGATTGTATTttcattaggtcatattttaaaCTATTTAGGAGAAGAAGATTTGTGTTTAGGCCAATTCTGTCTAAACAATATTTTTAATCGAGGCTAATTGTAATTGTCAAAAAACAAATGAATTGGCTCATTGTTCAAATTATACCAATTTAAGCACTAGTAAAAGTAATTCTCTGGAACATGAGTAGGTCAAATCAAACATTTCAGAAAAATAACCACATGCTTTTTAGATGTACACCTGCTCACTTGTGTCTGATGTCTCCTATTCTCTGCTTGATCAGGTTAATGTGATTCAAGACCCCAGGTGTATACTGTACGTTAAAGCCATACGCAGATGTGCAAGCTCGCTCACTCCTGCAGGGATTGGACAGAGAAGGGTCCTCTGGACGGATACAGAAATGATTACTTAGATAGAATGAATAGCTACGGAAAATGCTTTATATACCATAAAGCTATATTTTGTCTATATGTGTACATATTTATAAATATCTCTAAATCCGTTCTGTGTTTCCAGTTAATTTAGAGCAACAGGGAGACAAGTAGTTCAGTTAAAACTATCTGAGCCAGGCCTGATTCCAGTGTTATACTCAATAGTTTCTTGGTGTTTGTCAAAAAATGTCATGTACTTTTTTACATTGACCTCGATTCTCTAAAAGCAAAAGTCTTCAATCAACCAGCATAATACAAGGACCGCAAAGCCCTAACCCTCACCAGCTAACAGCTGTTCTATATGGGACCTGaaaacagcaacaaaaaaaaacgggTTATTACACACAAAAGACATGAAGCCCTCCAAAATCTATTTATTGCTTAGCAACTTGTATGTTCAACGTTATCAGGAAACGCTGAGCTCATGACACAATCACAGATTTCTTTGTCGAATTCAGCAAAATgtcaagaaagaaaaaaaacttcTTGACATGTATTTTTGTACAAAGGTAATTTTATCCCTTGCTTATGTACTCTGTACCTGCCATTTTCCTCCTGTGGGCtgttgtatacattgtttgtgtAAATGTTGATTTAGAATGGGGAAGGAAAAAGTGCGAAGAGGGGTTGCAGTGACACCCTGGTAACTGTCGCCTATACTTTGCCTTTTCGGGCCTATCGATACAAGATGAGATTGTCCTCTCATTACATTTTTGTCTATTTTTAACGAGTTGGAAAACGTCATCTGTTCTTTGTGGGTTGTTCTCCGATATTCTATCTTTCATGGAAAGACAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU444920 lncRNA upstream 91051 33651459 ~ 33706974 (+) True G391969
TU444937 lncRNA upstream 107514 33689980 ~ 33690511 (+) True G391985
TU444850 lncRNA upstream 154479 33643221 ~ 33643546 (+) True G391902
TU444851 lncRNA upstream 155126 33640540 ~ 33642899 (+) False LOC100136128
TU444893 lncRNA upstream 194333 33601561 ~ 33603692 (+) True G391942
TU444849 lncRNA downstream 618 33800308 ~ 33802030 (+) True G391901
TU445002 lncRNA downstream 38488 33838178 ~ 33844113 (+) True LOC110523646
TU445109 lncRNA downstream 133743 33933433 ~ 33934607 (+) True G392135
TU445139 lncRNA downstream 169363 33969053 ~ 33969268 (+) True G392165
TU445172 lncRNA downstream 228355 34028045 ~ 34071385 (+) True G392195
XM_021602528.2 mRNA upstream 305627 33490123 ~ 33492398 (+) True LOC110523645
XM_021602527.2 mRNA upstream 351519 33417418 ~ 33446506 (+) True LOC110523644
XM_036977308.1 mRNA upstream 538950 33226370 ~ 33259075 (+) True tsc1b
XM_036977300.1 mRNA upstream 834056 32909966 ~ 32963969 (+) False LOC110523632
XM_036977323.1 mRNA downstream 31016 33830706 ~ 33844121 (+) False LOC110523646
XM_021602530.2 mRNA downstream 32034 33831724 ~ 33844121 (+) False LOC110523646
XM_021602529.2 mRNA downstream 32591 33832281 ~ 33844121 (+) False LOC110523646
XM_021602536.2 mRNA downstream 32647 33832337 ~ 33842002 (+) False LOC110523646
XM_021602535.2 mRNA downstream 32647 33832337 ~ 33844116 (+) False LOC110523646
TU444741 other upstream 436684 33360957 ~ 33361341 (+) True G391805
TU444420 other upstream 635045 33158826 ~ 33162980 (+) True G391513
TU443183 other upstream 1577492 32220181 ~ 32220533 (+) True G390393
TU442960 other upstream 1837280 31960355 ~ 31960745 (+) True G390184
TU440680 other upstream 3510201 30286951 ~ 30287824 (+) True G388019
TU445804 other downstream 347784 34147474 ~ 34148701 (+) False G392776
TU448046 other downstream 2105422 35905112 ~ 35905781 (+) True G394882
TU448080 other downstream 2167247 35966937 ~ 36004829 (+) True G394910
TU448071 other downstream 2233570 36033260 ~ 36034767 (+) True you2
TU448184 other downstream 2403211 36202901 ~ 36206616 (+) True G395005

Expression Profile