RNA id: XM_036977321.1


Basic Information

Item Value
RNA id XM_036977321.1
length 6634
RNA type mRNA
GC content 0.45
exon number 28
gene id LOC110523649
representative False

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 33846773 ~ 34088984 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

agtacaACCCTGCCTCACACAGGAACAGGCACAGGTCCTAATTCAGACACTTGTcttctcccgtctggactactgcaactcgttgttggctgggctccccgcttcttccatcaaacccctgcaacttatccagaacactGTAGCCTGCCTGATTTTCAACCTTCCCAACCTTTCTCTCGACACCACGCTCCACCGCACACTCCACTGGgttccagtcgaagctcgcatccaatagaagaccatggtgcttacctacggaACAGCAAAAGAAACCCTCCTCACCTCGactccccccaacacacacacacacacaaaacttaaACAGCACTTGCACTTGACCCCTTCACCCCTTCTAGCTCTGACTTTACTGATATCTACGACATTGAGGAAAAATTtactttctatgcctgtgatatgtggttgtcccacctacctatcttaagatgaatgcactaactgctAAATTACTATAATGTAAAtgtagtaatcatggctgaaGGGGTCCTGACCTCCAGGTGGCCCCCATTGATTGTGTTAGTCACTGTCACTCAAATGTCATATTAACATGGCAAAAGTAATTgcaaaatgtgaagaattgcagttttaaaactgcaacaacaaaaagttCCGTAAAGCAAACGTATTTGTCTaccttttgtttaaaaaaaaaatgtgctaaAAGATCCCTTTGTATGAATAACATTACATACActtttgctgttctccaaatagcatttaagattttttaaattgtatcgaaatgcagtaaatgagttTCAACTTTCTTAAAATGTGCATTACAATCATTCCCACACGTGAGCGTGCGTAAACCAGAACCAACTGAACCCACGTTCAACATCGCCGCCCTCTCTACAGCCAAGCGCGTTCACGCTTTCTCTCAAACCTTCAGAATAGCGCGGCGGGGAGTAGAGAGACTGCAGAACACCACAATCCGTAACAAAAAAACGCGGAGGGGGAACAAGAAAGAACATAGAAACGGATTATTGGAGCATTTTTAAACGTTTCTTTCTATTAAAGTTGGTGTTTGGTATTCTGAGAATGACGAGAACGTGATTTTTTTCCTCCTGGACATGTTTCTGTTGGAGTTTGTGAAATATGTTTTCGAGTGCATTGTGGATAGGCTGAATGTTGAGTGTGACATCGTAAGAAAATTCATTTGATTTATCACAGTGTTTTACATTGAAATGTAATTGTTATCTATCAGAGCGGCATAGGAAATTGTATAGAGAAACTCTTAACAACCAGAAACTCTGGGTAGTTACGCAAAATACAATGGTATGTCGCTCTATACTGAGTGTCAGAACTGATTGTCTCAGCTGTTCAAAGTCATTTTTTTCCGGAGACAACGGTTTTGGACAGCAAGCTTGCATGATAGGTTCAATATTGAAATTTGGTAGGCTTTAATACACAAGCAAAGAAGATATTGGGGCATTATTATTCCCAATAGCCTATCTGTGATTTAAAACGTTTAGCCTACAATCTGGATTATGAGCTGAGTTCTAACACCTTCTGGATATGCAAAATCAACTTCGAGAATGAAGAAAAGGAAATTGTTTTCCCGGTAGTTCACATTGGTCTGTTTATTCAGAAGGTAATTTACACATTACATCGTGTTCATTTAATGTCGTCAACTTCTGAATGTTATGGTCAGAAACTCACGTCACTTGTTCAAAAGACTGAGCTGGACATGTTCTGACTGTGCTCCACTGGACATAGCCTATTTGAACAGAGCTGGAGCCAATTATATAAACTTAATCGGAAAACTAAAGTAGAACACTATTTTACCATAATTGTAAAGTTATCAGTTTCCTTAATACATGGGAAAATAATACAACTAATCACATTTTAATTGAGATTTGGATTTTAACACTGGTGGAAGGATTGCTTCGGTTGCGCACTGGAAGCGGCTGAATTTTGCCCACAGAGGCGGCTGTCGAATTTGAGTGTGGAACACACCCCCCAAGCCGACATGGAAGAGTGGCGGCAATGCGGGCGATGGTTGATAGACTGCAAGGTTTTGCCCCCAAACCACCGGGTCGTGTGGCCTTCTGCGGCCGTGTTCGACTTGGCACAGGCGCTACGAGACGGAGTGCTCTTGTGCCAAATGTTGCACAACCTCTCACCGGGGTCTGTGGACCTAAAGGAGATCAACTTCAGACCCCAAATGTCACAGttTCTGTGTCTGAAGAACATCCGGACATTCCTCAAGGTGTGCCACGACAAGTTTGGCCTGCGGAACAGTGAACTGTTTGACCCGTTTGACCTGTTTGATGTCAGGGACTTCGGCAAGGTGATCTCAGCCCTGTCCAGGATCTCCCACCACAGCATCGCACAGATCAAGGGGATCAGgccCTTTCCTTCAGAGGACACTGCTCTAAATGAGGATGACGTGTACCGGAGTCTTGAGGAGCTAGCAGAtGAGCATGACGTGGGGGAGGATGACATCTACGACTGTGTTCCCTGTGAGGACGATGGAGATGACATCTACGAGGACATCATCAAGGTGGAAGTTCGACAACCCATGAAAATGGGCATGACAGAAGACGACAAGAGAAACTGCTGCTTAGTGGAGATCCAGGAGACTGAGGCCAAGTACTACAAGACGCTGGAGGACATTGAGAAGAATTATATGATCCCTTTGAAGCAAGTTCTCAGTCCACCAGACATGGAGTCCATCTTTGTAAATCTTGAGGATGTGATTAAAGTCCACTTTGCTCTGCTGAGGGCCATCGACCTCAACATGGTGAGCGGAGGCAACGGTCTGGGGAAGATCTTCGTAGACTTCAAGGAAAGATTGTTGATCTACGGCCAGTACTGCAGCCACATGGAGAATGCCCAGAAGATACTGGATGAGCTCATCGCCACGCGAGAGGACGTTAAGATGAAAGTTGAGgagtGCACTATGAAGGTGCAAGAGGGCAAGTTCAAGCTCCAGGACCTGCTGGTAGTGCCCATGCAGCGGGTTCTCAAGTACCACCTCCTACTTAAGGAGCTGGTGAGTCATTCAACTGACCGACCTGAGAGACAGCAGCTCAAGGAGGCGTTGGAGgccatgcagGACCTGGCTATGTACATCAATGAAGTGAAGAGAGACAATGAAACCTTGAAGAAGATTAGTGAATTCCAGAACTCCATCGAAAACCTTCAGGTCAAACTGGAGGAGTATGGCAGGCCAAAGATAGATGGAGAGCTCAAGGTGTCCTCCATAGTCAACCGAACAAAGCAGGACCGGTACATATTCCTGTTTGATAAAGTGGTCATAGTGTGCAAGCGGAAAGGCTACTGCTATGAACTGAAGGAGATCATTGAGCTGCAGTCGTACAAAATGTCTGACGACCCCATGAACAACAGGGACATGAAGAAGtgGTCCTATGGCTTCTACCTGATCCACCTGCAAGGGAAGCAGGGTTTCCAGTTCTTCTGTAAAACAGAGGACACCAAGAGGAAATGGATGGAGCAGTTTGAGATGGCCATGTCAAACATCAAGCCGGAGAAAGCCACGGCCAATCAGCACAACTTCCAGATGCACACGTTTGAGAAGGACACCAACTGCCGAGCCTGCAAGATGCTGCTGAGggggATATTCTACCAGGGGTATTACTGTTCCCATTGTGGGACTGGAGCGCACAAAGAGTGTCTAGAGTGCATCACCATCTGTAAAATAAATCCACTCGACACAGAACCTGGACTACCGCCATCCGGTCCCAAAATGGTGGCAGTGAGGAACTATCACGGGATGCCTGTTCCTCCAGGGAAGCCTCCACTCTCCTTCCAGACAGGCGACTTCATCGAGCTGCTGAAGGGGGAACCTGACACCACCTGGTGGGAGggaaGGCTTATCCAAACCCAGAAGAGTGGCTTCTTTCCTAACAACTGTGTAAAGCCTTGTTTGGACCCCAAGCCTTTGTTCCAGTCCTTCCCCAGCCGGCAGCCCTCAAGGGAAACAGACTACTATGCATACCCGTGGTTTGCTGGCAACATGGAGCGGACACAGGCTGACAACCTGTTGAAGTCCCACAGCAGTgggacatacctgatcagagaGAGGACTGCTGAGGCAGAGAGGTTCGCCATCAGCATCAAGTTCAATGATGAAGTAAAGCACATTAAAGTCATTGAGAAAGACAGCTGGATCCACATCACTGAGGCTAAGAAGTTTGAGAGTCTACTGGAGTTGGTGGAGTACTATCAGTCTCATTCGCTGAAGGAGAGTTTCAAGCTGCTAGACACAACATTACGATATCCCTACAAATCTAGAGAACGGGGGCCGGCTTCGCGGGCCAGCACTCGCTCTCCAGCCATTGGTGCTTCCTACAACTTCTCCTTCCTCAGTCCTCAGGGTCTCAACTTCTCCTCCTCTCAGAGCTCAGCCCCCTTCTGGTCAGTTTTCACACCGAGGGTGGTCAGCACAGCGGTGGCCAGGTACAATTTTGCAGCACGGGACATGAGGGAGCTGTCACTCAGAGAAGGAGACATTGTCAAGATCTACAGCAAGATCGGAGGAGACCAGGGCTGGTGGAAGGGAGAGGCCAATGGCAGGATTGGCTGGTTTCCTTCAACATATGTTGACGAAGAAGGAGTTCAGTGAGGTTCTGATGTCACCACGGCTCCTGTCCAATCACATCACACCTCGCTCCACAGTCCTCAGAAAGGACTAGTTGGTTTCCAGGGAAACACCATGTGGAATACTTTTTTGCTGGATACTGATTTTGCAGTGAACAACGTTTCTATTCCGGTTTTCTTCCTACGCATCGGCTTTGcttatgttgtttttttgtaaGATCTTGTCCTGTTTGATCTCTGTGAGGAAAAACTGGATTCCAGTCTGTCTGCCTCTGGTTGTTCTGAGGGGGCTGACATGAACTGAGAAACATTGCAGAGAGAGGCCCAACATTCTCTACGTACAGAGACTGGGGAACCTATAGTTTTATTACATGAACAGACTCCTCCTTTGTTGCAGGTCTATGGGAGGGGGTAATATAATGTATAGATAATTTATTTAACAGAGATCCTAACGATTAATGTGTGAAATGGATATTAGCAACACAGCAGAGAAAAAGAGATGAAGAAAAATACAGATTTGTGTCTCTTTGCTGAAGATTTTGCcttagttgtcatggtgatgccTTGAGGGCGTAAACAAGAGGTAGACAGAGAAACGCCAGGATTCGTTtgtcttgcacacacacacacactcacttgccCTGACCACTATAACATTATGGTGCCTTTTGAAGTGTGGTTAATACTCACAGGATTCGTCAGTTATGGTCCATGGACCACCGCCAGCTTACAGTCGAGCTCTACCCGTCCAACCTCTACTGCAGAGTGCACTATGGatggagaagaagaaggaagggGGGAGGTGCAACATTTGGGACACAGCTCCAGTCCTTAACCCTCTGTTCATTCATTCAACCCCCTTTTCatctgaagacagacagacagtgcccTCAGAAGCATTGCACTAGAGTTGGGGAACTGTTCCTGACGCAGCCAAAAAAGAACAGTGACTCACCGTGGGGTGTAATGGCAGGTAGAATGGGTGTACAGATAGAAGGTTCACATCAGTCTCAGCACTTTAAGTCTATGGGTACTCCTCGCAATCAACAGGGGGCAAAAAAGGGAAATTTAAGTCAGTCTAACCCTCACCTAATGCACTGAATATCTATCTTGGTGTTCAACATTTTTGTtggttttattttgttttatttagtaaaagaccaaaCTTTACTTGCTAAAAACTGGACCAACCGTAATTATTTTAAAGCCAAATGcaacttattttttaaattaatttccGCATGAACTTCAACCTAGAGATTTTTATTATCAATTTGGTTGTACCTTGCCTTATTAACAGATGGACACATGGTCCTGGGATTTTAGGAAGTTTAAAATGTTGAAAATTCTCTGAATTTTATTTTTGGTGCTGTGGTGTCTGGTGAGGTAATATGGCAGCTCCATGAATTACTCAGAATCAAAAAGTCAACATCATTATGATGATCTACCTGAAAATAATATGTCACAATATAAATATATTGAATGCAGTCATACACTTTCTAGCTCCAAGGGGAAAGTGCACCAGATTGAATCTAGCCTACAGTGCAGAAAGCCACACTGGATCATTGACTGACCACATCCATGTAATCAGCTATTGAAGATAAAGATGGCTGCCATATTCTCTGGTTTCCTAACCCATCCCAGGTCAGTTGTCAACCCCAAGTACCCTCAATaatcgactgaccaggtgattcaAACAGTGACATTGGCTGAAAAACTAAGACTGATGTGGTGGAAGAGGAAAGAGTACTGTAGGTTTCTGATCGTATGTGACTATGTTGTGTGTATTCCCACTACTCCCAAACATAACTCCTGACACCTAAGATAGGAAGGGTTGATTTTGGGGGGAGTACATGTTGGCTAAGGGGGGGGGACTACTTAGTCGCtgtttgtgttgtggagaaaACTCAATGCATGTGGTTATAGATATTTCAACTCCTATCAGTACATCCTCAAAAAAATAACTTAATAGTGTACATTTTTCTTTGAATGGTTGAGTATTTCCAAAATGTGGTCTATCATGAAATAAATATTTCTCTTTTTGCCTACA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU445002 lncRNA upstream 2667 33838178 ~ 33844113 (+) True LOC110523646
TU444849 lncRNA upstream 44750 33800308 ~ 33802030 (+) True G391901
TU444848 lncRNA upstream 47090 33798025 ~ 33799690 (+) True LOC100136128
TU444920 lncRNA upstream 139806 33651459 ~ 33706974 (+) True G391969
TU445033 lncRNA downstream 111 34089095 ~ 34089794 (+) True G392063
TU445776 lncRNA downstream 2868 34091852 ~ 34092186 (+) True G392756
TU445806 lncRNA downstream 58722 34147706 ~ 34148701 (+) False G392776
TU445807 lncRNA downstream 59865 34148849 ~ 34150795 (+) True G392776
TU445841 lncRNA downstream 93756 34182740 ~ 34183700 (+) True G392804
XM_021602531.2 mRNA upstream 2659 33832337 ~ 33844121 (+) False LOC110523646
XM_021602532.2 mRNA upstream 2659 33832337 ~ 33844121 (+) False LOC110523646
XM_021602533.2 mRNA upstream 2659 33832337 ~ 33844121 (+) False LOC110523646
XM_021602534.2 mRNA upstream 2659 33832337 ~ 33844121 (+) False LOC110523646
XM_021602535.2 mRNA upstream 2664 33832337 ~ 33844116 (+) False LOC110523646
XM_036977324.1 mRNA downstream 18196 34107180 ~ 34147326 (+) False si:ch211-127i16.2
XM_036977325.1 mRNA downstream 18196 34107180 ~ 34147326 (+) True si:ch211-127i16.2
XM_021602552.2 mRNA downstream 347802 34436786 ~ 34448792 (+) True adra1ab
XM_036977338.1 mRNA downstream 997842 35086826 ~ 35198991 (+) False LOC110523660
XM_021602558.2 mRNA downstream 1265114 35354098 ~ 35357244 (+) False si:dkey-242g16.2
TU444741 other upstream 485439 33360957 ~ 33361341 (+) True G391805
TU444420 other upstream 683800 33158826 ~ 33162980 (+) True G391513
TU443183 other upstream 1626247 32220181 ~ 32220533 (+) True G390393
TU442960 other upstream 1886035 31960355 ~ 31960745 (+) True G390184
TU440680 other upstream 3558956 30286951 ~ 30287824 (+) True G388019
TU445804 other downstream 58490 34147474 ~ 34148701 (+) False G392776
TU448046 other downstream 1816128 35905112 ~ 35905781 (+) True G394882
TU448080 other downstream 1877953 35966937 ~ 36004829 (+) True G394910
TU448071 other downstream 1944276 36033260 ~ 36034767 (+) True you2
TU448184 other downstream 2113917 36202901 ~ 36206616 (+) True G395005

Expression Profile