RNA id: XM_021602557.2


Basic Information

Item Value
RNA id XM_021602557.2
length 1990
RNA type mRNA
GC content 0.51
exon number 3
gene id si:dkey-242g16.2
representative True

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 35354098 ~ 35357244 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTGACGAAGGTGGAGACAGGGGACATTTGATTGGTTAAACCACACGGTTCACGTGAAGACTCAACTGCTGGGGGCGCGACTCACGAGTAGGATCTCATTAAATACCCCTTGGATGTCTTGAGAGAACATTCACTTGAGCCGTCGAAAGGGTTGATACTGTAACAACGTTTAGAATGGAAACAACTGGGAGGTGATATTACGAAGGTATTCAGTGTGTTTATTCTCTGTTCTTCAAGCCAATTACAGATGGACTTTATTAGAGTGAATATTCCATATCATTCTGGTCTTTGCTAGAACATATTGTTAGCTCTGCTCCATACAACATCCAGTCTGAGAATGAGCTGTACACAAGTGCTTCATGTGTTTGTCGGCCACTCCATACCCCAGCAGTCTGCCATGCCAGTGGACCTCGCCATGCAACTGTGCCAGAGCCTGCCCCTCTGTCGTCTACAGGGTGTGTCCCCGCTGAAGATCCTGAGACCTCACCTTCACACCAGAGACTACCGGTCTCCCAGAGCCAGCCTTCACACTGCTGCGCCGcactcctcatcctcatcctcctcctccccagagcGGTCTGAGACCAAGAGCTGTGTGCGTAGGAGCAGTGCCAACCCTAAGAAGAAGCGTGTAGTGTTTGCTGATACTAAGGGGCTGTCTCTCACTGCAGTGCGACTATATATCCCAGACAACTCCTTTTCCACGACCCAGAGGGCTgactcttcttccctctctaacacctcctcccctcctatcAGACCGCAGGGCCTGTGGCCGGGTCCTGCCGGTGGGAAGCAGCAGCTCTTGAGATTAAGTCTGGCCTTCCCCCAACCCATGGCAGACTTCAAGACCTTCCAAGCCCGCCTGCAGGAGGTCCTGGTGCAGCTGGAGAGCTGCAGTGTGACTGAGCGATCACTGAGTGGCACCGTGCGTGTCTGCAATGTCAGCTTTGAGAAGGCTGTGTACGTGCGAGTAACCTTTGACTCGTGGCGAAGCCACCAGGACATCCCCTGTTCCTACCTGCAGCAGCGCTACGGGGCCACTGAGACTGACGTGTTTGCCTTTGATGTTCCCCTCCCCCAAAACCTGGATCCAAGCAAGCGTCTGGAGTTCTGTGTGTTGTTCCGGCCAGGCAGCGGGGCCGCGCTGCGTTGGGACAACAACGGGGGACagaactactgtgtgtgtgtagagcctGAGGGGGCTGGGTATAGTAAAGCCCCGGTACAGCGCCGCAACACCACTCCCCACTCCCTCCAACGTCCCCCCTCATGGCCAAGGAGTGGGGGAACCAGCCTGAAGAGCCCCCTTTACACTGAACTCTCCCACCCCTCAGAAGCCTTCATCAGCCAGAGTTCAGGGTGACTGGATAACTGTCACTTTCTGGTAGAGTGAACTCTCCCTAGTTGGGTCAGGAAGCGAGCCAGCCTTGCCACTTCTGATTCATTCAGGTGTGGATCTAAGTAGCTGTCTCAACTGCCAGCTGGGCAATCTGTTGCTTAGAAAATGTGCAATGTTAAACCTGATTTTAATCTTGAGCGAGGAAGTGACTCATTGAATTGACTGTTAAAATGGAATGACCCCACCTGATGGTAGAGGTTAGGAGGACTACAATGTGTTCCTTTGTAGTGGCCCTTAACGTCCACGGCTCATCTGGGCCCCAACTAATGTGAAATTGATTTGCACCATTGTATTTCTTACAGAATATAGTCctgtgttacttttttttttacccatttcaGTGGGTGAGTTTCCCAGCACCAAGATCACATAATAAGTTATTATTTTAGTGTATCTAGGCTTCTGGGAAACGTCCAGAGGTTTTTGTTTCTAGGTGTATATGATGCACTAATTGTACAAACTCAATGCCCTCCCACTGAGGCTGGATGCTCTTTATAACTGCCATGCAGACTCCAACTTCAGCCACCCTGACTGGTCTTTGAACAAATGTAATATGTGCTTTGAGTTTTTATTAAACATTTGAAAATAA

Function

GO: NA

KEGG:

id description
K07189 PPP1R3; protein phosphatase 1 regulatory subunit 3A/B/C/D/E

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU447473 lncRNA upstream 49559 35304311 ~ 35304545 (+) True G394373
TU447461 lncRNA upstream 54462 35299373 ~ 35299642 (+) True G394361
TU447419 lncRNA upstream 84134 35269644 ~ 35269970 (+) True G394321
TU447418 lncRNA upstream 84464 35269043 ~ 35269640 (+) True G394320
TU447410 lncRNA upstream 90747 35263087 ~ 35263357 (+) True G394312
TU447589 lncRNA downstream 85322 35442566 ~ 35443828 (+) True G394485
TU447605 lncRNA downstream 106575 35463819 ~ 35464867 (+) True G394495
TU447608 lncRNA downstream 108859 35466103 ~ 35466675 (+) True G394497
TU447577 lncRNA downstream 123664 35480908 ~ 35481712 (+) True G394473
TU447579 lncRNA downstream 203281 35560525 ~ 35596524 (+) True G394475
XM_036977338.1 mRNA upstream 155113 35086826 ~ 35198991 (+) False LOC110523660
XM_021602552.2 mRNA upstream 905312 34436786 ~ 34448792 (+) True adra1ab
XM_036977324.1 mRNA upstream 1206778 34107180 ~ 34147326 (+) False si:ch211-127i16.2
XM_036977325.1 mRNA upstream 1206778 34107180 ~ 34147326 (+) True si:ch211-127i16.2
trnaa-ugc-11 mRNA upstream 1321264 34032765 ~ 34032840 (+) True trnaa-ugc-11
XM_021602568.2 mRNA downstream 110696 35467940 ~ 35480670 (+) True stoml2
XM_036977348.1 mRNA downstream 124984 35482228 ~ 35542795 (+) True LOC118964586
XM_036977344.1 mRNA downstream 189301 35546545 ~ 35595618 (+) False unc13bb
XM_036977345.1 mRNA downstream 189303 35546547 ~ 35595618 (+) False unc13bb
XM_036977346.1 mRNA downstream 189303 35546547 ~ 35595618 (+) False unc13bb
TU445804 other upstream 1205403 34147474 ~ 34148701 (+) False G392776
TU444741 other upstream 1992763 33360957 ~ 33361341 (+) True G391805
TU444420 other upstream 2191124 33158826 ~ 33162980 (+) True G391513
TU443183 other upstream 3133571 32220181 ~ 32220533 (+) True G390393
TU442960 other upstream 3393359 31960355 ~ 31960745 (+) True G390184
TU448046 other downstream 547868 35905112 ~ 35905781 (+) True G394882
TU448080 other downstream 609693 35966937 ~ 36004829 (+) True G394910
TU448071 other downstream 676016 36033260 ~ 36034767 (+) True you2
TU448184 other downstream 845657 36202901 ~ 36206616 (+) True G395005
TU448219 other downstream 923056 36280300 ~ 36301290 (+) True G395034

Expression Profile