RNA id: XM_021604095.2


Basic Information

Item Value
RNA id XM_021604095.2
length 2519
RNA type mRNA
GC content 0.45
exon number 2
gene id LOC110524452
representative True

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 69742416 ~ 69745116 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTAGCTAAGCTGTTCAAATCAAAACAGTGAACAGTCAGTCACACGTTGCCAGAGGAGAAGACTGCTGCTGCAACTAGCTAACGTCTGTTTGGTGAATTCTGAAAACGCACATAAGCTATGTCGTTAGGTTAGCTAATCAACGTAACTACTTCCTTTGCTAACAGTAGACACAGGTTAGCTAGCAAGCAAATAGTTTAGCTAAAAAAAATACTCATAACCAGAGCCATCTATGTATCTTAATAAATGGCTGTGCTGATAACACCCATGGAATTATAATGAGTTAACGTTATCTAGCTCAAATTGAGCTTGAAAACATAGCAGTTAGCTGCATGCATGTCTCCATTTTGATGATGTAGCTAGATTCGACACTAAGCCATGGAGAGTTCTATGAAGAAAGCTGTTGTGGAACGGAGGTCGAGGCTTCTATATCTGTCCATGAGGCGTAGAGAGAAGATTAGGAAAGCCATCATGGATAAACGGATGGAAATCCAACGGCATATCAGACATAGAATGTATATCCTCAACAAAATGAAGAGGCTTGCACATACATTTCAGCCACCACCAAGCTCACCTTCAAGACCATCCTCCCCCTCAAGACCCTCACCCATGAGACATTACTCACCTGCAGAGCCTAAATCAGACTGGTGGGAGAGGGTTGTTACTAAGGAGTTCCATCCTCAAGACTGGCTCAACACATTCCATCTGACCAAGGACACATTTGACCAACTCTGTGACCAGCTCAGACCGGAAGTAAAAGACCCTACCTGTCATGTCTCTCTGGAGAAACGCGTGGCAATGGTTATATTACGGTTGGCCACCAACTTGGACTATCTCTCTATTGGTGACCTACTTGGCACGAGCAGCACCACAGTAATCAAATGTGTACGAGACGTATGCAATATCATTGTGACAGTGCTGAAGCCACTCTTCATTCATCAGCCAAGTGAACAGGAGCTGGAGGAAATTGCTGCTGCGTTCAACACACAGTGGGGTTTCCCTCATTGTGTGGGTGTCATTGACTCCCTTCACATTTCTGTGAAATCTCAAAGCCAAACCAGTGATGGCTGGAACAGCAAAGGATGGCCCTCCACGGTGGTGCAGGGAGTTGTGAATGGACATGGTCACTTCTGGGACATCCGTGTAGGCTTTTCAGGCAGCACTGATGATGCAACCATACTGCAGGGCTCTGAACTATGGATGTTGGCGAGAGAAGggggactgtcaccgaagacaccTCACAAACTCATGGGCCAACCTCTTGGCTTTGTGCTGTTGGGTGATGCAGCCTTCCCTTTGCAGACCTGGCTGCTCAAATGTTATCCAGAGTCACCTCAACTAACACCTCAGCAACGTGCATTTAATACTCAGCTAAGCCATGCACGGACCCCTATTGAGGGTACCTTTTGTCGCCTGAAAGCCCGCTGGCAGTGCTTAAAGCGCAACAACAGCAATGCTGCCCTGATCCCTGTGATGACTCAGGCATGCTGCATTCTACATAATATGTGTGAGATGAATAATGATCCCTTTATGGAGAAGTGGCTTGAAGAGTCGAGCCAAAGCCTTTCCCAGCCATGTGACCTAGCTCCTGCATGTCTGGATGACTCCAATGGCGAGGCGGTGAGGTCTTTGCTATGTGATTACCTTCATCAGCTACCAGAATCACAGAAGCAGGGCAGTACACATACAGCGCCACCTGACCTGGCAGACTCTCACCCTGTCACACTCTCGTGTGCTGAAGCAGTCAACATATTAACTACACTAGACTGACAATGTTGATCTGTAATCCTACTTTTCAAATGCATTGAAAAGTGATGTGTatattatggacagtatgtgcaTGTCTGCCATGAAGCATCCATAtcaattttttttaatataaaataTGGTTACTTGTTGTTTCCAGACTCAAAGCCCAGAAATGTGAAAACATTTCTATAAAACTAACCCCTGAAGTATGACTTGAACAGCACTGATTGACAAAGACAGTATTTACAGGAAACAATTGACATTTTAATACAGTCAACCTACAAAAATGTATAGAAAAAGCTGTTGGTCTATATGCATATGGAGAGGAATGATCCATGAGGTTGTGGAGTCAGTTACTCAGAGTGGCTTGCTGCATGATCACAGAACACATACTCAGCATCTGCAGGTACTCATCTGCACCATCCACTAAACACTTGTCGACCACCTGAAAAATGAGACAAATCAATAAGTCACAACTACTGTAAAATAAGATTAACATCAATGTGGCAGTTATGCCATTTTGAAACACCTACTGCCATCTTTTCTGTGATGGCAGACTTCTGCTTGTCATTCAGCTCTTCCTCTATGATGGCTTCGTGTAGCTGGTTGATGATCTGTGTGGCAGCATAGCCCTCATCTACCATGTTCTGTAAGTGGCAGAATGGCCGGGTGATTAGTCTGACAGAAAGGTGCTACATTAAAAGTGTCATGCAGTTAGATTTTCGATCCCTATGTAATGAAGCTGCAATAAAAAGTGAATGTGCATACCCGAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU490280 lncRNA upstream 5113 69737054 ~ 69737303 (+) True G432916
TU490278 lncRNA upstream 8245 69733886 ~ 69734171 (+) True G432914
TU490255 lncRNA upstream 35671 69706115 ~ 69706745 (+) True G432892
TU490185 lncRNA upstream 39114 69697287 ~ 69703302 (+) True LOC110524448
TU490141 lncRNA upstream 156020 69568625 ~ 69586396 (+) True G432803
TU490304 lncRNA downstream 9208 69754324 ~ 69754528 (+) True G432931
TU490332 lncRNA downstream 54835 69799951 ~ 69800841 (+) True G432959
TU490392 lncRNA downstream 172034 69917150 ~ 69917431 (+) True G433018
TU490394 lncRNA downstream 172947 69918063 ~ 69918303 (+) True G433020
TU490455 lncRNA downstream 256655 70001771 ~ 70031923 (+) True G433080
XM_036978244.1 mRNA upstream 39144 69614131 ~ 69703272 (+) False LOC110524448
XM_036978243.1 mRNA upstream 39144 69625716 ~ 69703272 (+) False LOC110524448
XM_036978242.1 mRNA upstream 198367 69529529 ~ 69544049 (+) False LOC110524446
XM_021604083.2 mRNA upstream 198367 69534606 ~ 69544049 (+) True LOC110524446
XR_005051845.1 mRNA upstream 202253 69505496 ~ 69540163 (+) True LOC110524444
XM_021604105.2 mRNA downstream 13110 69758226 ~ 69869326 (+) False mcf2l2
XM_021604099.2 mRNA downstream 13111 69758227 ~ 69869326 (+) False mcf2l2
XM_021604101.2 mRNA downstream 13111 69758227 ~ 69869326 (+) False mcf2l2
XM_021604106.2 mRNA downstream 13111 69758227 ~ 69869326 (+) False mcf2l2
XM_021604109.2 mRNA downstream 13112 69758228 ~ 69869326 (+) False mcf2l2
TU488020 other upstream 1528312 68212716 ~ 68214104 (+) True LOC110524423
TU487928 other upstream 1638882 68103179 ~ 68103534 (+) True G430796
TU487402 other upstream 2278093 67460729 ~ 67464323 (+) True LOC110524407
TU487389 other upstream 2278273 67460729 ~ 67464143 (+) False LOC110524407
TU486149 other upstream 2694252 66981949 ~ 67048164 (+) True G429156
TU492109 other downstream 1214494 70959610 ~ 70959932 (+) True G434653
TU492265 other downstream 1473673 71218789 ~ 71223578 (+) True G434792
TU492302 other downstream 1553499 71298615 ~ 71298900 (+) True G434829
TU492480 other downstream 1930755 71675871 ~ 71687169 (+) True ralgps2
TU494101 other downstream 2758344 72503460 ~ 72504435 (+) True G436403

Expression Profile