RNA id: XM_036978306.1


Basic Information

Item Value
RNA id XM_036978306.1
length 6888
RNA type mRNA
GC content 0.51
exon number 23
gene id LOC110524508
representative False

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 72275458 ~ 72359871 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GCAGAGGAAATGGCCCTTAGACGTCACTACTTCTTGGTCGCTACCTGATCCTATTGGTGTACCGCAGTACTGCCCTAATGCTATTGGCCGAGAGGAGAACCTCAGGAAAGCTTAGCAAAATCGAGCAGGGTAACAGAGCAACAGAAGACAGCGAGGGGCGGCGAGGGAATGACTGAATGAAAATTCGCCTAGCTACATCGACTGTAGTTTTAGGAAAGTGCCACCCTCCCTTAAATATTTCCTATTGTATAATCAACAAACGTAATATTTAAAACATATCTTGCTAGTAAAATCCTAAAATAGCGAGGATGTTGGTCCCCGCTGGAAGATAATGAAGCGGTTGCGCGTTTTGTTCGTGTGCCTCATTGTAGCTGTCCTTTGCTGgTACCCCAGAAGTCATGTGTGTTGTTCAGAGCACAACTCGTCAGGTCCAGGTGTGTCTAGTGGAGACAGCAGCCCCCCAGAGCATCTTCACGACCATGAGCATGCGCAGTACCACAGGACGGACCTCAAGATGGAGTCgccgaggacacacacacactcctcctacgacgtgggactggagacagagAGGGCTGCACTAGAGGAGcccaacacacacaacactgaacagGCTGTGAATCAGGAGGAGCCTGTAGTGGTAGAGGTCTGGTCAGCCCCAGAACCACACGCTGATCCTGAACCCCCCGCTGCTGCTGCTGAGCCAAGCACACAAATGacacagcctcacacacacacccacccagagCCCGATACACAACTCCCTCCCCTCCAGGACCAGGCAactccaccctcctccaccccATCGCCCAGCGATGACCTAGCCCAGGACCAAGCCTCCACAGACCCCCCAGCCCCGCCCGAGACCCGCAGTGATGCCCTGGCAGAACCCAGCCCAGCCCCGGCCACAGAAGACCCCCAACACACACCTACCTCTCACACCCCTGCCCCAGCCAGTGGTGATGCTGACCTAGTGGAGAGCCAGTCAGAGCAGGATCAAATTCAGGCTGGTTCTGATGCTGATGTCCAAGCATCTGTCAGCCTAGAGGACCCAGACCAGGACCAAGGTCTACCAGAGCTGGACCTGGGGGGAAACACGTCCCACAGGCACCAAGACACCGACCAAGACCAGCAGGCAGTGGATGCCAGTGATGCCAGCGCTATTGAGACGGACCCCTCAGTGCCCAGTAAGGAGGACATCCCAACCTTCGACGAGTGGAAGAAACAAGTCATGGaagtggagaaagagaagaCTCTGTCCCTCCATACCTCTTCAAGTGGAAGCCCCCCTGTGAAGAAGGTACAGAAGAACTTTAAAAACAACTATGCTTCTGTGGAGTGTGGCGCTAAGATACTGTCAGCTAACACAGAGGCCAAGAGTACATCTGCTATCCTCATGGAGAATATGGACCTGTACATGCTGAACCCCTGCAGCATCAAGAtctggtTTGTGATAGAGCTGTGTGAGCCCATCCAGGTGAAACAGTTGGACATCGCTAACTTTGAACTCTTCTCCTCCACACCTAAAGACTTCCTGGTCTCCATCAGCGACAGgtATCCCACCAACAAGTGGTTGAAGTTGGGAACGTTCCACGCCCGTGACGAGCGCACCGTCCAGAGCTTCCCATTGGATGAACAGCTCTACGCCAAATACATCAAGATGTTCATCAAGTACATAAAGgTGGAGCTCATCTCCCACTTTGGATCAGAACACTTCTGTCCCCTCAGCCTCATCAGggtGTTTGGTACCAGTATGGTGGAGGAATATGAAGAGATTGCAGATTCTCAGTACCCCTCAGAGAGGCTGGAGTACCTTGATGAGGATTATGACTACCCTCCTGGGTACCTCCACTCTGAGGACAAGGGGTCCAAAAATCTGCTGGGCTCTGCCACAAATGCCATTCTCAACATGGTCAACAACATAGCAGCCAATGTTCTGGGAGGCAAGCCTGAGGGAGGAGCACAGATAGAAGCCAACGCATCATCAGAAGCCCAGAACGAGACTGAGGGAAACAAAGATGTGCAGCTCACCCCAACTCCAACCCCCACCACTCCTCCTCCAGTTGTGGAGACAGTGGAGCCAGACGACCCTGGTCCCCAGGAGGACCCTGACTCCCCCCTGCTTCCCCCCTCCCCGGAGGATGGACAGATCGTGACTCTGATGGAGGAGGAGCCCCCACAGTCCACTGTGACTctgatggaggaagagggggatgatgatgagcaggaggagagagaggaacagtgggagagggagagccaaCTGTACTGTCcactctcttctgtctcttctctttcttGTGTGGCCACACTGCCAGAGTTGCTACAGCGCTGGTGTGACGCTCACCTCACCAGAGAGAGGCagcaagacacacacacccctatacAGGTCCCTGTccctacccccacacacacacaggaagccccaacacacacagagacggtgCCTGAGACTGCCCCCCAAGCCCAAAATGAGGGGCTACCCCCTTTAGACTCTCAAAATCATACCCTTTACATCGACACACCCCCCGTGGATACTATCATTTTGCTGGAGCCTAGCCGGACCTTTACCCTGCCCCCCCACAGCTTCTCTCAAACCTCCCTCTGCAAACCCACCCCTACCCAGGACGAAGCTCCCCAGCACCCCAGCCAAGAAGACCCTGTCCCCCCTCCAACCCTGCAGGGAGCCCCCATCCCGGAGACTCAACAGGCCAGCACCCCCACCCCTACTCCCAGCTCCACCACTCCCCTACACCTACCAACCTCTGAGACAGCCTCCCTGGACATCCCTCCCTGCCCCTTGAAGGAGCAACCAGTCCAGCCCCTTCCCACAGCCTCTAGACCTGCAGACCTCCCCCCTCCCACTGACCTCCCTGTCCCCCCTCAGCCTGACACaaacacagagccacacacacccAGGGCTGGGGCAGAGAGTGGAGACATCCAGGGTCAGGGGGAGCAGGGAGATGCCTCTGCCCAGCCAGCAGAACACCTGCATGGGGAAGAATCCGTGGAAGACCTACTGCTTAGCGTCCCGGTGACCGCTAACGGACATTTACACCGGACGGCTACAGACTTCTACGCTGAGCTGCAGAACGCGGGGGAGTACATTGGAGGGAATGGAGGGGTGAACGTGTATGGCTCCAGTCAGAAGGAGAGTGTGTTCATGAGGTTGAACAACAGGATCAAAGCCCTGGAGATGAACATGTCCCTCAGCAGCAGATACCTGGAGGAACTCAGCCAGAGGTATCGTAAGCAGATGGAGGAGATGCAGAGAGCATTCAACAAGACCATAGTCAAACTGGAGAACACCTCCCGCATCGCTGAAGAACAGGACCAGCGGCAGACAGAGTCTATCCAGATGTTACAGGGCCAGCTGGAGAACGTCACCAAGCTGATGATCAACCTCACCATGACTGTCTCACAGCTACAGAGAGAGGTGTCTGACCGACAGAGTTACCTGGTGGTGTCTCTagtcctgtgtctctgtctgggccTGGTGCTCTGCCTGCAGTGCTGCTGGAGTGccaacacacacaccgtcacacacactgcaggaaaccactaccccagccccaagagGTGTTTCTCCTCCTATGATGATTTGAGTCTGAAGCGGAGGGTATCGTGTCCTCTCCTACGCTCCAAGTCCTTCACCTTTCCTACTTCAGAAGGCCCTGACGACCTTTACATTGTTGAACCTTTAAGGTTCTCACCAGAGAAAAAGaagAAACGATGTAAACTGAAGGCAGCATTATCAGCCCCCTCTTCTCCGATGGCTAACGGGGGACTCAAATGCAAGGGTCTCCCCCACTCCCTGAATCCCCCTCCTCCTTTAGAAGACATGTCCTGTAAGGAGCTCCCCTTCCCATCAGAGAATAGCAGCTGTAGCTCCTCCAGCCACTCTGAAGAGTCCTACATCAGCCGAggccatcccctctcctcccccccaggCCTGTGTAATGGCCACGCTGCCGTGCTCCTCCCATCcaaccttccctccctccctctcccctcctcccttccctccctccccctctctcttccctctaagAGGTCAGTGAAGCGTCGGCGGTCTCGTCAGGGAGATCTGCAGTTCTcctccagacagacaggaggcgCTGCTGTGAATGCTCTGCACAGCCTGCAGCAGCTGATCAAGGGAAACAAGGAGATCAGTGTGGGGACCATAAGAGCCACGGCAGTCACAGGACACGTctgatcacacacacatgcacacttcaGACTgactcatatacacacaccctGGTAGCAGACTTGGTTAGGGATGTGTGAAAGAGTGTGGTCTTGCCCCAAAATGGCCACATCTCTGAACCACATCTCCCATGAGCACCCTGCCCACAGTGGAACTCGAACACCATGATATTAGTCACCTAGCAACAGCCATTCAGAGACCTCTCCACGGTCATGTGCCTTTCTGTCCACTCTAAAGCTTTCACTGATATAAAAAAACACTGAAAGGATTGTTCTTTTTATGTTCGGAGCGAGACTAATGGTGGGGAGTGTTACTAGAAAACAGACATTCATTCAGCTCTTTCTACTGGACAAGCACATCAGACCTGGGCAGCAGGGGCTTGTACTCCAGCCCTGTGCCcagaggagaggggctgagtggagcTCTTACCTGGTACCTTGTGAAAGTACAGTATGAAGCTGTAAGGATGAAATGTGTCGCAGTGAGAGAACTGTGCAGCAGGATTagcttcttctccctctttcctcctgtcctccatttCTACATTCTGTTTATTTTCTGTGCATTGTTCAGTGCTAGCTAACACTACTGCAGTTGTTCGTATGGGACCAGGGTGTTAACCCTTCACACACAACAGggcctctgtctccctttctcagGCAGTCTAACCTAACACCATGCAACTAGCAGAGCTGAATGAAGATACATACCCAATGTGTGCGTGAGCATGTAAGCCTTCCTGTCTCTAGCCCATGTTTATCCAGCTCTGATACAAAGGAACAGGCTCTATACCTCTTGAACTCGTTAACCTAGCTATTCTCCAGTCAGacttcccgtgtgtgtgtgtgtgtgtgtgtgtgtgtgttcgttcacACAGAGAGCCAGCCAAGAGGAAAGGGATCTTGTACTCTATAGACTGGTTGTTTTTGCACATTGTGACAGGTCAACAGAACCCAGTCAGTTAGGTTTTTATATTGAGCTGTGTATGAGCCGTGCTGAGAGCTGAATGTTGTGTGTTATTATAGTTGTTAAGAACAGTTTAGTCTGAAGATGTCGGTGTGTTCGAGCACACAAACACCCGCTGTTGGTAGAAGTTGCCTCTAGGATCTGCTTTCCTTCCCCCCAATTCCTAATATTAACCATTCATATCAAAGTGTAATGCAACACTGACCTTTCGATCAGTGACACAGGGTAATGTCAGTCTTGCGAGCAGATCCCCTGAGGTCCTGTAGGGGATGCTGTGAGGCCACTTTTATTTATCTAGTTATTTATGTTCTGGCTTCAAAACAACCCTATCATGTAGCCCAGGGGAAACGCATGGTACATGTTACATAGAATAATAATGATTGCAATTAAAACAAAGGTAGATGCATTTTACTGTCGCATACTGTATGATTGTCACTGGCTGCCCGACACCTCTTTCACCTCGTGACCAATATTTGTTTGGGGTTTTCAAAGCTATACGGACAACAAGGTATCATCCACCTTTTGTCTCTGTAAAAGTGGTTTGATCATCTGGTGTTTGCAGAGTTGCCTCCACTGTCACAGCTGCACACACACCATCGTGTTAATTAGAACCCTACCAGGGAACAGAGGGCTGTAACAGTCCCAATAACTGCTGGGGTCGTATACGAACCAGCTTCACCTCACGAGTTACTGTTATGGGGAGATAAAGTTAAAACAAATGTTTGAAGTTGATTTGTTTGTCTGATTCTAGATGTCTGTGAGAGGATGTGATTGGAATGGCAAAAGTCAATTTGAATAAGTTGCAGGTGTGAAATCATCTGTGTACTATATATCTGTGTACTATATATCTGTGCCAGTGGTTAGTATGCCGGTGGTTAGATGGCCTCTGAGCTATGTTGGGTTGGTTGTTGACTGACTGAGAAAGAGACTGGGCCCACTGTGTTCTACAAACTACACACACCACATTACCTCTACAGACCAACCACCCAGGTCCCCTACTCCACacactgacctctgacccctacaCAGTTCAGGGTTCAGAAAGTGTGAAGAGCTCTCTTTTAGTGCATCTGTTTTAATTGAACCACTTCTGTTCCCATTACCAAGAACAGCACCTTTAACTGGCCACCTCTGCTATCCTTACTAGCTTGTcattcattcatgtgtttattACTGTGCATTTACCCCACCTCGAATAAGGTAGTGGTTTTCAGAGGAGTCTGAAGGAACTTGTGAACTTAATAAAGGGAATGTTGGGAAAGGGTTTGGAACGCACTGTTTTATCTGATTACAAGTGTTCCACACCCAGTGAATCATGACCGACTTAGTTTTTCTACCTTTTTGAATGTGTATGATATTATGTGTATGATATTATGTGTATGATATTATGTGTATGCATGCAAGAGTGTTTGTTTGTTCTCTTGATGCGTGTTTGTGAGAGACTCAGCGAAGCCCTAATTTAACACACTGACTAGAGATTGGTACTCATGACCCCCAGGTCTCAGTGTGCACTTTTATTATTACTACCTTCATGCCTTTTGTTTTTCTACACTAAACGCTGTCTGTCAACTGCTTTGCTTCTCTCTTTCTGAGTATTCTGGGAAAGAGCTGCACAGTATTGTGGAACAGGAGCGACAGTAACTACAAAGATGTAGTACCATTAGAAACTGTGAATttctaaataaaacattttgtctTTCACTCGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU493975 lncRNA downstream 8874 72265590 ~ 72266584 (-) True G436286
TU493929 lncRNA downstream 19372 72226993 ~ 72256086 (-) True G436247
TU493947 lncRNA downstream 40377 72232236 ~ 72235081 (-) True LOC110522996
TU493960 lncRNA downstream 56167 72219054 ~ 72219291 (-) True G436272
TU493959 lncRNA downstream 56698 72218531 ~ 72218760 (-) True G436271
TU494027 lncRNA upstream 35846 72395714 ~ 72396482 (-) True G436336
TU494028 lncRNA upstream 36661 72396529 ~ 72396782 (-) True G436337
TU494031 lncRNA upstream 49530 72409398 ~ 72409744 (-) True G436339
TU494032 lncRNA upstream 50060 72409928 ~ 72410331 (-) True G436340
TU494035 lncRNA upstream 54602 72414470 ~ 72414673 (-) True G436343
LOC118964719 mRNA downstream 2709 72271876 ~ 72272749 (-) True LOC118964719
LOC110522996 mRNA downstream 40247 72232164 ~ 72235211 (-) False LOC110522996
XR_005051589.1 mRNA downstream 215044 72059571 ~ 72060414 (-) True LOC110524500
XM_036979055.1 mRNA downstream 243411 72022726 ~ 72032047 (-) True prdx6
NM_001124411.1 mRNA downstream 441711 71831642 ~ 71833747 (-) True jun
XM_036978324.1 mRNA upstream 492200 72852068 ~ 72858397 (-) False LOC110524515
XM_036978323.1 mRNA upstream 492200 72852068 ~ 72864137 (-) False LOC110524515
XM_036978322.1 mRNA upstream 492200 72852068 ~ 72866266 (-) False LOC110524515
XM_036978325.1 mRNA upstream 496186 72856054 ~ 72866268 (-) True LOC110524515
XM_021604242.2 mRNA upstream 645387 73005255 ~ 73010401 (-) False LOC110524517
TU493828 other downstream 153761 72040962 ~ 72121697 (-) True G436172
TU492898 other downstream 988466 71286390 ~ 71286992 (-) True il23r
TU492901 other downstream 1044869 71229182 ~ 71230589 (-) True LOC110524478
TU492700 other downstream 1206571 71068025 ~ 71068887 (-) True G435176
TU492773 other downstream 1283660 70990892 ~ 70991798 (-) True G435234
TU494572 other upstream 228416 72588284 ~ 72588576 (-) True G436830
TU494584 other upstream 256428 72616296 ~ 72616944 (-) True G436842
TU494589 other upstream 312286 72672154 ~ 72672826 (-) True G436847
TU494616 other upstream 414693 72774561 ~ 72775868 (-) True G436873
TU494824 other upstream 734926 73094794 ~ 73095336 (-) True G437054

Expression Profile