RNA id: TU439470


Basic Information

Item Value
RNA id TU439470
length 273
lncRNA type intronic
GC content 0.47
exon number 1
gene id G386959
representative True

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 29364712 ~ 29364984 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

attgtgttgtctggtgtgaTGTACTGTGTCGTGTCGTGTAGCATTGTACTGGCTCAGGAGAGTCTATGTGATGAAGCACACAGTAACAGACTACCTAAGTGGATTTGTCTTGCCGTTGTTCGGATCcttgcgtgtctgtgtgtgtgcattaccCAAAGATATCTCACCCTAAAGAGTGCCACTGTCAGCACTATCGCCTCTATTTATAGAAGCATTTGCATTATCTGGCTGCACATGTGCAGCAGGGAACCCTAGCTTATTGACTAAGCCAGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU439428 lncRNA upstream 69323 29295178 ~ 29295389 (+) True G386918
TU439344 lncRNA upstream 87055 29276801 ~ 29277657 (+) True G386846
TU439305 lncRNA upstream 167349 29197131 ~ 29197363 (+) True G386815
TU439304 lncRNA upstream 167614 29196887 ~ 29197098 (+) True G386814
TU439294 lncRNA upstream 176800 29187621 ~ 29187912 (+) True LOC110523576
TU439473 lncRNA downstream 2573 29367557 ~ 29367678 (+) True G386962
TU439475 lncRNA downstream 12096 29377080 ~ 29377290 (+) True G386964
TU439476 lncRNA downstream 12710 29377694 ~ 29377939 (+) True G386965
TU439484 lncRNA downstream 22286 29387270 ~ 29387475 (+) True G386973
TU439485 lncRNA downstream 24067 29389051 ~ 29389363 (+) True G386974
XR_002473468.2 mRNA upstream 52384 29304337 ~ 29312328 (+) True mtfp1
XM_021602393.2 mRNA upstream 52989 29304337 ~ 29311723 (+) False mtfp1
XM_021602390.2 mRNA upstream 102071 29254638 ~ 29262641 (+) False LOC110523578
XM_036977228.1 mRNA upstream 102071 29255030 ~ 29262641 (+) True LOC110523578
XM_036977222.1 mRNA upstream 176744 29176618 ~ 29187968 (+) False LOC110523576
XM_036977237.1 mRNA downstream 347944 29712928 ~ 29721236 (+) False LOC110523583
XM_036977236.1 mRNA downstream 347947 29712931 ~ 29722688 (+) False LOC110523583
XM_036977240.1 mRNA downstream 347948 29712932 ~ 29722688 (+) False LOC110523583
XM_036977238.1 mRNA downstream 347949 29712933 ~ 29722688 (+) False LOC110523583
XM_036977239.1 mRNA downstream 348715 29713699 ~ 29721236 (+) False LOC110523583
TU438959 other upstream 433781 28926277 ~ 28930931 (+) False spag8
TU438217 other upstream 947157 28416605 ~ 28417555 (+) True G385805
TU437511 other upstream 1459981 27904467 ~ 27904731 (+) True G385171
TU437387 other upstream 1657634 27706714 ~ 27707078 (+) True G385053
TU437362 other upstream 1681319 27675352 ~ 27683393 (+) True LOC110522888
TU439971 other downstream 376816 29741800 ~ 29746194 (+) True tbx5a
TU440079 other downstream 532002 29896986 ~ 29898134 (+) True G387516
TU440680 other downstream 921967 30286951 ~ 30287824 (+) True G388019
TU442960 other downstream 2595371 31960355 ~ 31960745 (+) True G390184
TU443183 other downstream 2855197 32220181 ~ 32220533 (+) True G390393

Expression Profile