RNA id: TU439946


Basic Information

Item Value
RNA id TU439946
length 220
lncRNA type inter_gene
GC content 0.39
exon number 1
gene id G387399
representative True

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 29703734 ~ 29703953 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CAAAACATCTGCGGGAACTTCAATAAGGCAAAGCACAACTTCTGATCGTTCAGTTGTATTGTCTGCCTTTGTAAATATGGCCAGCCGCATGTTTCAAATGTCACAAGACTCTGACAACTTTAAATGTGGAAACACCAAGTAAAGATAGCCTATAATATGCAGGGAGCCAATGGAAAATCCGTCTGCAATGTGACTTTTATTAAAGTAATGTTCTATGACT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU439942 lncRNA upstream 8041 29695449 ~ 29695693 (+) True G387395
TU439928 lncRNA upstream 15916 29687616 ~ 29687818 (+) True G387387
TU439915 lncRNA upstream 27887 29675578 ~ 29675847 (+) True G387374
TU439909 lncRNA upstream 32914 29670610 ~ 29670820 (+) True G387368
TU439723 lncRNA upstream 184195 29519243 ~ 29519539 (+) True G387189
TU439948 lncRNA downstream 1931 29705884 ~ 29706123 (+) True G387401
TU439952 lncRNA downstream 7350 29711303 ~ 29711709 (+) True G387405
TU439953 lncRNA downstream 7811 29711764 ~ 29711963 (+) True G387406
TU439934 lncRNA downstream 13115 29717068 ~ 30103035 (+) False LOC110523583
TU439935 lncRNA downstream 13115 29717068 ~ 30103090 (+) True LOC110523583
XM_036977231.1 mRNA upstream 257554 29341278 ~ 29446180 (+) False LOC110523581
XM_036977237.1 mRNA downstream 8975 29712928 ~ 29721236 (+) False LOC110523583
XM_036977236.1 mRNA downstream 8978 29712931 ~ 29722688 (+) False LOC110523583
XM_036977240.1 mRNA downstream 8979 29712932 ~ 29722688 (+) False LOC110523583
XM_036977238.1 mRNA downstream 8980 29712933 ~ 29722688 (+) False LOC110523583
XM_036977239.1 mRNA downstream 9746 29713699 ~ 29721236 (+) False LOC110523583
TU438959 other upstream 772803 28926277 ~ 28930931 (+) False spag8
TU438217 other upstream 1286179 28416605 ~ 28417555 (+) True G385805
TU437511 other upstream 1799003 27904467 ~ 27904731 (+) True G385171
TU437387 other upstream 1996656 27706714 ~ 27707078 (+) True G385053
TU437362 other upstream 2020341 27675352 ~ 27683393 (+) True LOC110522888
TU439971 other downstream 37847 29741800 ~ 29746194 (+) True tbx5a
TU440079 other downstream 193033 29896986 ~ 29898134 (+) True G387516
TU440680 other downstream 582998 30286951 ~ 30287824 (+) True G388019
TU442960 other downstream 2256402 31960355 ~ 31960745 (+) True G390184
TU443183 other downstream 2516228 32220181 ~ 32220533 (+) True G390393

Expression Profile