RNA id: TU440140


Basic Information

Item Value
RNA id TU440140
length 1303
lncRNA type antisense_over
GC content 0.47
exon number 2
gene id G387570
representative True

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 29975379 ~ 29976702 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GCAGACTCGGTCTCCTCTGGTCCCCAACAAACTTCCCCGGCTGCTGCCCCATAAGGGCAGGGTGCCAGGCCGCAGCCGGGTCTCCAAACTGGGCTCTCTCAGTGCCTGGGTCCGGGGCACCTGGTGGGTAGGGGATGGAGAGCAGGGACCACCTCCGTGGTGTGATTTCCCTCAGTCAGTTTGGCCTCTCCAGATGTTCACTTCTGCATCCCACCGCTGACACCAATCCAGGGGTTTTTGATGGAGGTCAATGCAACGGCAAATAGACGACAAGTCCTTCTCACTGATTCCACCCTCTTGATCATGCATTGACTGCTTTGGTAGAGTCTTACTGTCAGATGAGATCTGGTCTCTTATGGCACTTGTGTCTTTTATTTAAGACACAAGCAGTCACATAGGAGGATACTGGAGGAGCAAGATCTAAGGCCTAATTATGATGGCATACATTCATCCAGCATGTAATAATAGAATGTAGGCCTACGTTCCATATTTGGTCAACAAACGTATTGATTTTCAGCACCATGCAATCCACTGATTTGTCATGACTGATTGTATATTTGACATTCAACTAACATTTTGCTGTCATCTGGACATCCCGCAGTGTTTTTCAGGCCACAATTATGCATGACAAGACGCTACCGCGGGATAAAATGTGTTTGAGGAAAAATCGTGGGAAACTTAGCTAACGAACGTTGGCATTACTCAGATGGTAGGCACTTGCTTCACCAGAAAGCAAATGCTCTGTATTTGAATACAATTTCTGACAACTGAATGTTATTTAGTAGCTATGAAGATGCAAGAATGGCTGTGCAACATTTTGTTTGTTGGAATACTAGCTAGCGAACTAGCTCCAGCTAACGATGGAGCTAGCCTTACTGGCTAGATGGTGGTACGCCGCGCGAGACCCTGGGAATTAACATCGGAACAGTCAACCTAATAACCAGTTCTAACTTCGGACCGTGTACTTCGTCGTCTCGTTTGACTCAATATTGACAACATTAATAAAGGTTTCCCGAACTGTCCAGTGTCCTCCCCAACCCTTAGTATTCAATTCCTATTCAAACTTCGTGTCCACTCTTTCTGTCTTGCGGAGTTTCTCTCCCGTGCACCCCAACCCAGGCACTTTAACCAAGGCGCATACTCCAAACTTCTCGAACCAACCAGTGTGTTGCTTGGGCGTTTTCGTAGCTCCTTCTCAACACGTGCAACTAGCAAGTTCGTCGTTTCTATCTCCCTCGTTTCTAAACGTATTTATTGCTCTTTCGATAAAATCTTAACAATATACACCGGTAGGACAGCCGTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU440040 lncRNA upstream 144237 29830848 ~ 29831142 (+) True G387484
TU439953 lncRNA upstream 263416 29711764 ~ 29711963 (+) True G387406
TU439952 lncRNA upstream 263670 29711303 ~ 29711709 (+) True G387405
TU439948 lncRNA upstream 269256 29705884 ~ 29706123 (+) True G387401
TU439946 lncRNA upstream 271426 29703734 ~ 29703953 (+) True G387399
TU440125 lncRNA downstream 19776 29996478 ~ 30003512 (+) True G387556
TU440167 lncRNA downstream 55999 30032701 ~ 30077928 (+) True G387597
TU440218 lncRNA downstream 128621 30105323 ~ 30112442 (+) True LOC110524747
TU440232 lncRNA downstream 137037 30113739 ~ 30184969 (+) True G387655
TU440235 lncRNA downstream 145993 30122695 ~ 30123495 (+) True G387657
XM_036977244.1 mRNA upstream 72456 29859609 ~ 29902923 (+) True LOC110523590
XM_021602422.2 mRNA upstream 211940 29741863 ~ 29763439 (+) False tbx5a
XM_036977236.1 mRNA upstream 252691 29712931 ~ 29722688 (+) False LOC110523583
XR_005051713.1 mRNA downstream 128591 30105293 ~ 30108549 (+) False LOC110524747
XM_036977247.1 mRNA downstream 156970 30133672 ~ 30217715 (+) False LOC110524742
XM_036977246.1 mRNA downstream 156972 30133674 ~ 30217715 (+) False LOC110524742
XM_036977249.1 mRNA downstream 156972 30133674 ~ 30217715 (+) False LOC110524742
XM_036977254.1 mRNA downstream 156972 30133674 ~ 30217715 (+) False LOC110524742
TU440079 other upstream 77245 29896986 ~ 29898134 (+) True G387516
TU439971 other upstream 229185 29741800 ~ 29746194 (+) True tbx5a
TU438959 other upstream 1044448 28926277 ~ 28930931 (+) False spag8
TU438217 other upstream 1557824 28416605 ~ 28417555 (+) True G385805
TU437511 other upstream 2070648 27904467 ~ 27904731 (+) True G385171
TU440680 other downstream 310249 30286951 ~ 30287824 (+) True G388019
TU442960 other downstream 1983653 31960355 ~ 31960745 (+) True G390184
TU443183 other downstream 2243479 32220181 ~ 32220533 (+) True G390393
TU444420 other downstream 3182124 33158826 ~ 33162980 (+) True G391513
TU444741 other downstream 3384255 33360957 ~ 33361341 (+) True G391805

Expression Profile