RNA id: TU443159


Basic Information

Item Value
RNA id TU443159
length 229
lncRNA type intronic
GC content 0.35
exon number 1
gene id G390372
representative True

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 32194200 ~ 32194428 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

attaatacaggtaacgagtggaggacagaggagcctcttaaagaagaagttacaggtctgtgagagccagaaatcttgcttgtttgtaggtgaccaaatactaattttccaccataatttgcaaataaattcattaaaaatcatacaatgtgattttcaggattttttttctcagtttgtctgtcatggttgaagtttacctatgatgaagattacaggtctctctcat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU443156 lncRNA upstream 2481 32191318 ~ 32191719 (+) True G390369
TU443148 lncRNA upstream 17683 32176306 ~ 32176517 (+) True G390361
TU443142 lncRNA upstream 35074 32153642 ~ 32159126 (+) False LOC110523608
TU443140 lncRNA upstream 35074 32158710 ~ 32159126 (+) True LOC110523608
TU443063 lncRNA upstream 102711 32086350 ~ 32091489 (+) True G390283
TU443161 lncRNA downstream 2203 32196631 ~ 32197569 (+) True G390374
TU443167 lncRNA downstream 8181 32202609 ~ 32203613 (+) True G390380
TU443168 lncRNA downstream 9397 32203825 ~ 32204377 (+) True G390381
TU443169 lncRNA downstream 11822 32206250 ~ 32206466 (+) False G390382
TU443170 lncRNA downstream 11822 32206250 ~ 32206667 (+) True G390382
XR_002473470.2 mRNA upstream 33783 32152908 ~ 32160417 (+) False LOC110523608
XM_036977274.1 mRNA upstream 1221857 30966139 ~ 30972343 (+) False LOC110522913
XM_036977271.1 mRNA upstream 1338602 30741854 ~ 30855598 (+) False LOC110522910
XM_036977272.1 mRNA upstream 1338602 30741854 ~ 30855598 (+) False LOC110522910
XM_036977270.1 mRNA upstream 1482540 30675527 ~ 30711660 (+) True LOC110523597
XM_021602468.2 mRNA downstream 63500 32257928 ~ 32270782 (+) False lhx3
XM_021602467.2 mRNA downstream 66220 32260648 ~ 32270782 (+) False lhx3
XM_021602466.2 mRNA downstream 66222 32260650 ~ 32270782 (+) True lhx3
XM_036977283.1 mRNA downstream 139074 32333502 ~ 32336445 (+) False LOC110523612
XM_036977284.1 mRNA downstream 146448 32340876 ~ 32390222 (+) False LOC110523614
TU442960 other upstream 233455 31960355 ~ 31960745 (+) True G390184
TU440680 other upstream 1906376 30286951 ~ 30287824 (+) True G388019
TU440079 other upstream 2296066 29896986 ~ 29898134 (+) True G387516
TU439971 other upstream 2448006 29741800 ~ 29746194 (+) True tbx5a
TU438959 other upstream 3263269 28926277 ~ 28930931 (+) False spag8
TU443183 other downstream 25753 32220181 ~ 32220533 (+) True G390393
TU444420 other downstream 964398 33158826 ~ 33162980 (+) True G391513
TU444741 other downstream 1166529 33360957 ~ 33361341 (+) True G391805
TU445804 other downstream 1953046 34147474 ~ 34148701 (+) False G392776
TU448046 other downstream 3710684 35905112 ~ 35905781 (+) True G394882

Expression Profile