RNA id: TU447864



Basic Information


Item Value
RNA id TU447864
length 214
lncRNA type inter_gene
GC content 0.51
exon number 1
gene id G394728
representative True

Chromosome Information


Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 35630641 ~ 35630854 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


CTTTAGCTGCTCCATGCTGTCCCACTTTAGCTGCTCCATGCTGTCCCACTTTAGCTGCTCCATGCTGTCCCACTTTAGCTGCTCCATGCTGTCCCACTTTAGCTGCTCTATGGTGTCCTACTTTAGCTGCTCCATGTTGTCCCACTTTAGCTGCTCCATGTTGTCCCACTTTAGCTGCTCCATGTTGTTCCACTTTAGCTGCTCCATGTTGTCC

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU447858 lncRNA upstream 6588 35623839 ~ 35624053 (+) True G394722
TU447576 lncRNA upstream 31182 35597628 ~ 35599459 (+) True G394472
TU447579 lncRNA upstream 34117 35560525 ~ 35596524 (+) True G394475
TU447577 lncRNA upstream 148929 35480908 ~ 35481712 (+) True G394473
TU447608 lncRNA upstream 163966 35466103 ~ 35466675 (+) True G394497
TU447867 lncRNA downstream 1585 35632439 ~ 35632653 (+) True G394731
TU447882 lncRNA downstream 38581 35669435 ~ 35669708 (+) True G394746
TU447883 lncRNA downstream 39049 35669903 ~ 35670207 (+) True G394747
TU447893 lncRNA downstream 51168 35682022 ~ 35682653 (+) True G394753
TU447897 lncRNA downstream 55652 35686506 ~ 35692482 (+) False G394757
XM_021602574.2 mRNA upstream 10093 35602601 ~ 35620548 (+) True atp8b5b
XM_036977344.1 mRNA upstream 35023 35546545 ~ 35595618 (+) False unc13bb
XM_036977349.1 mRNA downstream 8874 35639728 ~ 35651003 (+) True LOC110523670
XM_036977351.1 mRNA downstream 28374 35659228 ~ 35667190 (+) True si:dkey-106l3.7
XM_036977366.1 mRNA downstream 193359 35824213 ~ 35862626 (+) False sppl3
XM_036977367.1 mRNA downstream 193359 35824213 ~ 35862626 (+) False sppl3
XM_036977364.1 mRNA downstream 193360 35824214 ~ 35862626 (+) False sppl3
TU445804 other upstream 1481940 34147474 ~ 34148701 (+) False G392776
TU444741 other upstream 2269300 33360957 ~ 33361341 (+) True G391805
TU444420 other upstream 2467661 33158826 ~ 33162980 (+) True G391513
TU443183 other upstream 3410108 32220181 ~ 32220533 (+) True G390393
TU442960 other upstream 3669896 31960355 ~ 31960745 (+) True G390184
TU448046 other downstream 274258 35905112 ~ 35905781 (+) True G394882
TU448080 other downstream 336083 35966937 ~ 36004829 (+) True G394910
TU448071 other downstream 402406 36033260 ~ 36034767 (+) True you2
TU448184 other downstream 572047 36202901 ~ 36206616 (+) True G395005
TU448219 other downstream 649446 36280300 ~ 36301290 (+) True G395034

Expression Profile