RNA id: TU484037


Basic Information

Item Value
RNA id TU484037
length 1618
RNA type TUCP
GC content 0.45
exon number 2
gene id G427287
representative True

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 64566681 ~ 64568380 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTCATTACATCGCCCACATCAATGGGCTAGTTCATTTTGCATGGCCTCTCCCACTCCCCCAGACCATCCCACCCACAGCACTCCCGGAGGTCTTTCACCTGCCCCACAGGTCCTTCCCTTGGCCACGCACTGGCTCCCCATCTTCCCCTTCTAGAGAATGTGGTAACATCCACCTCAATCATCACCAACTCCTCCAGGTAGACGTTGCCCATAGATCATAATGAGAGTTCGTTATAAGACATGGCCCTGGAGGGCCTCCATGACATCGCTATTATATGACATCTCTCAACATGTACACTCATCAGACCATTCAGATTTACAGGGGTCACACAGTAGCTTTGAACACATTGCGTTATCATCCATCTGTACACAGGCAGAACTGCCCACTCCTGGACCATGTCCACCTTTGGATATGAGCCTTACTCAtggttgaggctgttctgagcaGAGCTACACGATATAGAGAGTACACGGGTGTGTATATGGGAGGGGGAGGTTTAGAGGACACTGAAGTTAGAGGCGAGTCCTACTCGGCTCCATTTCCAGTTTGGGACACAGGGAGACAATGACATTAAAAACCAGCAGACAGACCCATATCAAAACTCCCACTGAGCTGTGTGGCTGCAGAGATCTTCCCAGACCGATCAGTCCTATGTGGTTAGTCACAGCCCTGCTTCTCTTGGGAACATGCAATTCAAATTAGATACTCAAAACTAAAAAGGAAATATCATACAAATTAAATCATACAATTCGTTTTTCAATAGTAGCACAATTTATTTTTCTCCCTGGCTCTAAGCAAATCCAACCTACgttcttttttttgcctttagaGCTttatttacagttcatatatatatacaccgaGTTCAAAGGTCACAATGTAGTAgtgaaaatacctgtctatgtaCCCTACAAATACAATAGAAAACACTAATGTCGTTGTCGACTTGGAGTAAGTAGCCATTTCCCTGAAATCGCAGAATACCTTGAACACGGACATTATAGTTTCATATCCTGGGTAGTGGTATGTCCTTTCAccatgtataatataatacaacCATATTGCTGCTGAATCTAACCCCCCTCCACACAGCCCTTACAAACCCTTATCTCCCtcggcgcgcacacacacacacacacaccatggtccTACTGCTCGTCAAGAATtcaaaaggcaaaaaaaaaatattttcttttCGCAAATGTTTTGTTTACTACAGAGGTTTCATTTTGTTAAAAACAGGAAAAAAGGTAACAAAACGAGAGGAAAAAAAACAGGTCTTTGGAAGAATCCCGCATTGTGTCGCTAGACTACCAGCTTTTTCTCAgagcattttttttaaaggtcaaAGTTCCAGAGATCTGACTTCGCCCTCATCTGAATCCTTTACAAacgtaaacaaaacaacaaagtacaACGTGTGTCTCTGGTCTCCACGACACCCGCCACTCTCTTTACAGTCCTTGGGGCACCAAGGGAGCCTCGCCCCCACTTTATCCAATCAGAGCGCTCCTTCCTCAGTAGATAACTTCGTACACAGTGGCCTTCTTGTCACCGGAGCCCGTCACAATGAACTGGTCATCGGGGGAGATGTCACAGCTGAGCACCGAAGACGAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU483758 lncRNA downstream 52931 64513454 ~ 64513750 (-) True G427037
TU483754 lncRNA downstream 56631 64509775 ~ 64510050 (-) True G427033
TU483751 lncRNA downstream 56917 64509545 ~ 64509764 (-) True G427030
TU483744 lncRNA downstream 62186 64504107 ~ 64504495 (-) True G427023
TU483715 lncRNA downstream 92159 64470102 ~ 64474522 (-) True G427005
TU484035 lncRNA upstream 113 64568493 ~ 64570074 (-) True LOC110524326
TU484113 lncRNA upstream 150507 64718887 ~ 64775461 (-) True G427360
TU484143 lncRNA upstream 211495 64779875 ~ 64780140 (-) True G427386
TU484732 lncRNA upstream 357890 64926270 ~ 64926746 (-) True G427909
TU484733 lncRNA upstream 359392 64927772 ~ 64928219 (-) True G427910
trnaq-uug mRNA downstream 51859 64514751 ~ 64514822 (-) True trnaq-uug
XM_021603860.2 mRNA downstream 149924 64407229 ~ 64416757 (-) False LOC110524323
XM_036978072.1 mRNA downstream 149924 64407229 ~ 64416757 (-) False LOC110524323
LOC110524322 mRNA downstream 184135 64379050 ~ 64382546 (-) False LOC110524322
XM_036978067.1 mRNA downstream 269305 64283744 ~ 64297376 (-) False LOC110522986
XM_036978077.1 mRNA upstream 104 64568484 ~ 64644073 (-) False LOC110524326
XM_036978078.1 mRNA upstream 104 64568484 ~ 64644073 (-) False LOC110524326
XM_036978079.1 mRNA upstream 104 64568484 ~ 64644074 (-) False LOC110524326
XM_036978080.1 mRNA upstream 104 64568484 ~ 64644074 (-) False LOC110524326
XM_021603869.2 mRNA upstream 95947 64664327 ~ 64701391 (-) False LOC110524329
TU483573 other downstream 280322 64283968 ~ 64286359 (-) True LOC110522986
TU482381 other downstream 1263287 63300924 ~ 63303394 (-) True G425810
TU482441 other downstream 1306212 63259648 ~ 63260469 (-) True LOC110524282
TU482212 other downstream 1666178 62894659 ~ 62900503 (-) True G425647
TU482168 other downstream 1716434 62850004 ~ 62850247 (-) True G425612
TU484034 other upstream 133494 64701874 ~ 64706025 (-) False LOC110524330
TU484039 other upstream 157547 64725927 ~ 64732972 (-) True LOC110524330
TU484689 other upstream 336665 64905045 ~ 64910998 (-) True LOC110524332
TU484709 other upstream 431328 64999708 ~ 65011598 (-) False G427902
TU484971 other upstream 801736 65370116 ~ 65382590 (-) False G428132

Expression Profile