RNA id: TU492152


Basic Information

Item Value
RNA id TU492152
length 1349
lncRNA type inter_gene
GC content 0.34
exon number 1
gene id G434685
representative True

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 71066535 ~ 71067883 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TACAtgctttttaaaaacatttattccATAAATAGAATTTGCTTTAAACATCAACCATTTCACTGACAGGAGTACAATAACATACCTTTTTTCTTCAATGAACATGATCAAGAGAAACAAACGGCTGACTTTACATCAGTGTCCTTGTAGAGATGTATCCATATTGCCTTCATAAACTGATTGAGATTGTCACATTTCAATCTGAACAAGATGCTGCATTTATATCAAAACTGAGTAGCAAACAAGTACAATCCATCAGATATGACCAATGCTGACCATGATCAATAGTAGTGCCAGATATAATTACGAATATTGGTACCATGCAAATAAATAGCAAGCTCCACTGACTTCTTGGACAAGTGTCTCCCATTTCAAGCTACTGAGAGGTATGTAACGGCTAAAAATAGTAACCATATAAAATCCCATGATTATGTATCTCGGCAATATTCTGATAAATATGTATGCTGATGTGCATAATGTCACTGTCATTGATAGCAAGTTTAAAATGGTTGTCTCAATGACCCTCTTGACTCAGACATTTCCATTATTGTGGGCTAAAAGGCCCCAAAAGCTAAAGAGGATACAGAGAGCAAAAGCAGTTGCATTCAGTCCGTGAGGTTCTCTCGCCTGCCCTATTACCAGTAATATGATGGAAATGTATACAAACATTAACAAGTGGTTAGTAAGAGAGGGGGAAAAGACTAACAAATTAAAGAAAAACATGATTCAAATGATAGGCAATGATTAGTGAAAGGCAAACAGAAACAATTTGTGGCTTTGAAAACAACTAGATTTGAAAGCTATTTCATGTCATCCTGGCAGCTATTTCATATCTGGGTTGTTCCACGAAAAGAGTACCTTTTGTGACCCTTTGATATtctaagtagaaattgtgcaccaatattaaATTCTAAAGCCTAtaatattaaatgaagtgccctttaatatagaccacatgtaAAATTCTATAAAATCAGATTGCACCGAAAAtaagcattttgacatgtccctctgcACCCTCTAAGatgattttaacccacttaacctgAATATTTCCCCAAGTtttaccatcattgtaaagccctactTATTTAGTTGCTTTGCATttctaaaaaaatatttattttacgtTATCAGTGATtcattcaaataaaaaataaaaaagtttgagtggattttccctttaatatggtgaaactgttcctttatttttggggggccattatctggtgttttgtggtgaaaACTGAGTGTGTTGAGAATAACACAACCCTGTTATCTGTAGAGATGCTctagaaatgtttatttttatttatgtatatacagtggggcaaaaaaagtatttagtc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU492143 lncRNA upstream 453 71065500 ~ 71066082 (+) True G434682
TU492169 lncRNA upstream 47098 71017405 ~ 71019437 (+) True G434702
TU492159 lncRNA upstream 66453 70999806 ~ 71000082 (+) True G434692
TU492140 lncRNA upstream 72195 70993634 ~ 70994340 (+) True G434679
TU492138 lncRNA upstream 73370 70992537 ~ 70993165 (+) True G434677
TU492216 lncRNA downstream 82533 71150416 ~ 71151014 (+) True G434747
TU492223 lncRNA downstream 94066 71161949 ~ 71162234 (+) True G434754
TU492228 lncRNA downstream 99718 71167601 ~ 71206727 (+) True G434759
TU492264 lncRNA downstream 150906 71218789 ~ 71219725 (+) False G434792
TU492269 lncRNA downstream 156329 71224212 ~ 71224475 (+) True G434796
XM_036978268.1 mRNA upstream 1377 71055573 ~ 71065158 (+) True LOC110524466
XM_036978267.1 mRNA upstream 2299 71055573 ~ 71064236 (+) False LOC110524466
XM_036976509.1 mRNA downstream 39212 71107095 ~ 71130228 (+) False impact
XM_036976508.1 mRNA downstream 39214 71107097 ~ 71130228 (+) False impact
NM_001160535.2 mRNA downstream 39296 71107179 ~ 71130053 (+) True impact
XM_021604158.2 mRNA downstream 71887 71139770 ~ 71150100 (+) True LOC110524471
LOC110522992 mRNA downstream 241461 71309344 ~ 71324730 (+) True LOC110522992
TU492109 other upstream 106603 70959610 ~ 70959932 (+) True G434653
TU488020 other upstream 2852431 68212716 ~ 68214104 (+) True LOC110524423
TU487928 other upstream 2963001 68103179 ~ 68103534 (+) True G430796
TU487402 other upstream 3602212 67460729 ~ 67464323 (+) True LOC110524407
TU487389 other upstream 3602392 67460729 ~ 67464143 (+) False LOC110524407
TU492265 other downstream 150906 71218789 ~ 71223578 (+) True G434792
TU492302 other downstream 230732 71298615 ~ 71298900 (+) True G434829
TU492480 other downstream 607988 71675871 ~ 71687169 (+) True ralgps2
TU494101 other downstream 1435577 72503460 ~ 72504435 (+) True G436403
TU494306 other downstream 1927616 72995499 ~ 72995735 (+) True G436588

Expression Profile