Gene
RNA
| Item | Value |
|---|---|
| RNA id | TCONS_00031731 |
| length | 1633 |
| RNA type | mRNA |
| GC content | 0.53 |
| exon number | 8 |
| gene id | XLOC_016059 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_007113.7 |
| NCBI id | CM002886.2 |
| chromosome length | 59640629 |
| location | 854444 ~ 879800 (-) |
| genome version | GRCz11_2017_zebrafish_Genome |
| species | zebrafish (Danio rerio) |
| id | name | namespace |
|---|---|---|
| GO:0006355 | regulation of transcription, DNA-templated | biological_process |
| GO:0002320 | lymphoid progenitor cell differentiation | biological_process |
| GO:0002376 | immune system process | biological_process |
| GO:0045638 | negative regulation of myeloid cell differentiation | biological_process |
| GO:0097535 | lymphoid lineage cell migration into thymus | biological_process |
| GO:0000785 | chromatin | cellular_component |
| GO:0005634 | nucleus | cellular_component |
| GO:0001227 | DNA-binding transcription repressor activity, RNA polymerase II-specific | molecular_function |
| GO:0001228 | DNA-binding transcription activator activity, RNA polymerase II-specific | molecular_function |
| GO:0003700 | DNA-binding transcription factor activity | molecular_function |
| GO:0000977 | RNA polymerase II transcription regulatory region sequence-specific DNA binding | molecular_function |
| GO:0000981 | DNA-binding transcription factor activity, RNA polymerase II-specific | molecular_function |
| id | description |
|---|---|
| ZDB-GENE-070912-330 | Enables DNA-binding transcription activator activity, RNA polymerase II-specific; DNA-binding transcription repressor activity, RNA polymerase II-specific; and RNA polymerase II transcription regulatory region sequence-specific DNA binding activity. Acts upstream of or within lymphoid lineage cell migration into thymus; lymphoid progenitor cell differentiation; and negative regulation of myeloid cell differentiation. Located in chromatin and nucleus. Is expressed in several structures, including hematopoietic multipotent progenitor cell; hematopoietic system; liver; pleuroperitoneal region; and thymus. Human ortholog(s) of this gene implicated in acute lymphoblastic leukemia; anaplastic large cell lymphoma; chronic lymphocytic leukemia; multiple myeloma; and peripheral T-cell lymphoma. Orthologous to human IRF4 (interferon regulatory factor 4). |
| ensembl_id | ENSDART00000019733 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TCONS_00033756 | lncRNA | downstream | 124214 | 728660 ~ 730230 (-) | True | XLOC_016057 |
| TCONS_00033343 | lncRNA | downstream | 239588 | 552481 ~ 614856 (-) | False | XLOC_016051 |
| TCONS_00033342 | lncRNA | downstream | 239588 | 552481 ~ 614856 (-) | False | XLOC_016051 |
| TCONS_00033755 | lncRNA | downstream | 239640 | 565097 ~ 614804 (-) | True | XLOC_016051 |
| TCONS_00033341 | lncRNA | downstream | 322000 | 495311 ~ 532444 (-) | True | XLOC_016050 |
| TCONS_00031734 | lncRNA | upstream | 4306 | 884106 ~ 898791 (-) | True | XLOC_016060 |
| TCONS_00033757 | lncRNA | upstream | 51268 | 931068 ~ 1195912 (-) | True | XLOC_016061 |
| TCONS_00033758 | lncRNA | upstream | 238952 | 1118752 ~ 1121302 (-) | True | XLOC_016063 |
| TCONS_00033344 | lncRNA | upstream | 435366 | 1315166 ~ 1331542 (-) | True | XLOC_016067 |
| TCONS_00033345 | lncRNA | upstream | 525711 | 1405511 ~ 1406153 (-) | True | XLOC_016069 |
| TCONS_00031730 | mRNA | downstream | 121580 | 731491 ~ 732864 (-) | True | XLOC_016058 |
| TCONS_00031729 | mRNA | downstream | 132274 | 720781 ~ 722170 (-) | True | XLOC_016056 |
| TCONS_00031728 | mRNA | downstream | 138018 | 713080 ~ 716426 (-) | True | XLOC_016055 |
| TCONS_00031727 | mRNA | downstream | 147292 | 696244 ~ 707152 (-) | True | XLOC_016054 |
| TCONS_00031726 | mRNA | downstream | 165397 | 686873 ~ 689047 (-) | True | XLOC_016053 |
| TCONS_00031732 | mRNA | upstream | 2154 | 881954 ~ 898899 (-) | False | XLOC_016060 |
| TCONS_00031735 | mRNA | upstream | 64541 | 944341 ~ 985417 (-) | False | XLOC_016062 |
| TCONS_00031737 | mRNA | upstream | 294978 | 1174778 ~ 1188707 (-) | True | XLOC_016064 |
| TCONS_00031738 | mRNA | upstream | 338958 | 1218758 ~ 1227221 (-) | True | XLOC_016065 |
| TCONS_00031739 | mRNA | upstream | 385171 | 1264971 ~ 1279387 (-) | True | XLOC_016066 |
| TCONS_00031725 | other | downstream | 270877 | 583451 ~ 583567 (-) | True | XLOC_016052 |
| TCONS_00031733 | other | upstream | 2536 | 882336 ~ 897919 (-) | False | XLOC_016060 |
| TCONS_00031736 | other | upstream | 70448 | 950248 ~ 956225 (-) | True | XLOC_016062 |
| TCONS_00031757 | other | upstream | 1421558 | 2301358 ~ 2301434 (-) | True | XLOC_016081 |
| TCONS_00031768 | other | upstream | 2246158 | 3125958 ~ 3126074 (-) | True | XLOC_016090 |
| TCONS_00031770 | other | upstream | 2507772 | 3387572 ~ 3403034 (-) | False | XLOC_016091 |
| species | RNA id | representative | length | rna type | GC content | exon number | chromosome id | location |
|---|---|---|---|---|---|---|---|---|
| grasscarp (Ctenopharyngodon idella) | CI01000098_01084929_01096605.mRNA | True | 2770 | mRNA | 0.44 | 8 | CI01000098 | 1084929 ~ 1097920 (+) |
