RNA id: TCONS_00033757


Basic Information

Item Value
RNA id TCONS_00033757
length 635
lncRNA type read_through
GC content 0.54
exon number 2
gene id XLOC_016061
representative True

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 931068 ~ 1195912 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ttatacagtggatgtaaacttctgctttcaactgtataacTTTAACATCAGTGGTTATCGTTCTGCTAGCGTGACTTGGGACAGTGGCGTTTGGCGTGTGTCAGCAGGTTGCTGGATTGAGTGAATCTCCGTCCGCAGAGGGGACAGTGATACGGCCGTTCTCCGGTGTGAATGCGCTCGTGTCTCCGCAGTCCTCCGGAATGGCTGAATCTGCggccgcagtgtgaacacttgtagggTTTTTCGCCGGTGTGAACCCGCTGGTGCATCTTCAGCGCGTTTGCGGTGATGAAGGTGTTCCCGCAGTCGGGGCAGCTGAACGCCCGGACGCCGCTGTGGATGTTCTCGTGATCTTTAAACGTGAAGAGCCGCGTGAAACTCTTCCCGCAAATCGAGCACAGGAAGGGCTTCTCGTGGGTGTGCACGGACAGGTGAGTCTTCAGGTGAGACGCTAGGATGAACTTCTTCCCGCATTGATCGCAGGTGAACGGTCTCTCGCCTGAATGGTAGCGCAGGTGACTCTTCACATCCGTAGCTCTTTTGAAGGTCTTTCCACACTGCAGGCATCTGAACGGACGCGCTTCAGGCCTCTTTGGTTTTTCTCGACTCGTGATTTCTGATTTGTTTTGGCCATC

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00031734 lncRNA downstream 32277 884106 ~ 898791 (-) True XLOC_016060
TCONS_00033756 lncRNA downstream 200838 728660 ~ 730230 (-) True XLOC_016057
TCONS_00033343 lncRNA downstream 316212 552481 ~ 614856 (-) False XLOC_016051
TCONS_00033342 lncRNA downstream 316212 552481 ~ 614856 (-) False XLOC_016051
TCONS_00033755 lncRNA downstream 316264 565097 ~ 614804 (-) True XLOC_016051
TCONS_00033344 lncRNA upstream 119254 1315166 ~ 1331542 (-) True XLOC_016067
TCONS_00033345 lncRNA upstream 209599 1405511 ~ 1406153 (-) True XLOC_016069
TCONS_00033346 lncRNA upstream 303995 1499907 ~ 1514014 (-) True XLOC_016073
TCONS_00033347 lncRNA upstream 449647 1645559 ~ 1647983 (-) True XLOC_016076
TCONS_00031754 lncRNA upstream 975459 2171371 ~ 2172639 (-) True XLOC_016079
TCONS_00031732 mRNA downstream 32169 881954 ~ 898899 (-) False XLOC_016060
TCONS_00031731 mRNA downstream 51268 854444 ~ 879800 (-) True XLOC_016059
TCONS_00031730 mRNA downstream 198204 731491 ~ 732864 (-) True XLOC_016058
TCONS_00031729 mRNA downstream 208898 720781 ~ 722170 (-) True XLOC_016056
TCONS_00031728 mRNA downstream 214642 713080 ~ 716426 (-) True XLOC_016055
TCONS_00031738 mRNA upstream 22846 1218758 ~ 1227221 (-) True XLOC_016065
TCONS_00031739 mRNA upstream 69059 1264971 ~ 1279387 (-) True XLOC_016066
TCONS_00031741 mRNA upstream 152369 1348281 ~ 1364678 (-) False XLOC_016068
TCONS_00031740 mRNA upstream 152369 1348281 ~ 1364678 (-) True XLOC_016068
TCONS_00031742 mRNA upstream 232784 1428696 ~ 1443692 (-) True XLOC_016070
TCONS_00031733 other downstream 33149 882336 ~ 897919 (-) False XLOC_016060
TCONS_00031725 other downstream 347501 583451 ~ 583567 (-) True XLOC_016052
TCONS_00031757 other upstream 1105446 2301358 ~ 2301434 (-) True XLOC_016081
TCONS_00031768 other upstream 1930046 3125958 ~ 3126074 (-) True XLOC_016090
TCONS_00031770 other upstream 2191660 3387572 ~ 3403034 (-) False XLOC_016091
TCONS_00031782 other upstream 2918206 4114118 ~ 4114216 (-) False XLOC_016100
TCONS_00031783 other upstream 2920402 4116314 ~ 4116400 (-) True XLOC_016100