RNA id: TCONS_00031736


Basic Information

Item Value
RNA id TCONS_00031736
length 746
RNA type processed_transcript
GC content 0.43
exon number 5
gene id XLOC_016062
representative True

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 944341 ~ 985417 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AAACCTGCTGGACCTCCAGCCAGACGATGTGGTCTTCTATGTGGGAGGATATCCAGATAACTTCACGCCACCGGCTTCTCTCAACTATGGCAAATACAAAGGCTGCATTGAGTTTTCCACCTTCAATGAAAAATTCCTCAGTCTGTACAACTTTAAGAACGCCGTCAATATTAACCTGGAAACTCCTTGTAAGAGGCAAATCCCACTTAAAAGCACAGAGTCGGATTATTTCGAAGGCTCTGGCTACGCTAAAGTCCTGCTGGAAAGATTCCCCTCCAATCTGCAGCTCGTGCAGAGAGTGGAAACCCGAGCCAAAGATGCTCTACTGCTGTATTTAGGAGACAAGGATGATGTAAAAATCTGTTTACACCTATTAATTATTATTCTCTTGTGTCCTTTACACACATCACATCACTGTACTCCTTCAACAGGACTTCTACTACAGTGCGTCTCTTGAAGGCGGTTATCTAGTTCTACGAGGACAAGAGAAGGATACCATTTTGGAGCCCATCAGAAGTAACGAACAACCAGTTCTTTCTCCGGGAATAGACGTGAGACTCATTCTTGTTAATCGAAAAAATCTAAGGGTAATAATAGGGACCACCGAAGTCAAAAGGGACGTCAATATTCCAAGGAAATTCCTTTATTACTACATCGGTGGAATTCCCAGCATTTTGCGTGAGAGGTACAACATCACTGTGCCCGCGCTGAAAGCTTGTGTCAAAAATATTTTGGTTTCGAACGTG

Function

GO:

id name namespace
GO:0016358 dendrite development biological_process
GO:0045995 regulation of embryonic development biological_process
GO:0030155 regulation of cell adhesion biological_process
GO:0009887 animal organ morphogenesis biological_process
GO:0009888 tissue development biological_process
GO:0008045 motor neuron axon guidance biological_process
GO:0030334 regulation of cell migration biological_process
GO:0007155 cell adhesion biological_process
GO:0005604 basement membrane cellular_component
GO:0005102 signaling receptor binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-230 Predicted to enable signaling receptor binding activity. Predicted to be involved in animal organ morphogenesis; neuron projection development; and tissue development. Predicted to act upstream of or within several processes, including cell adhesion; regulation of cell migration; and regulation of embryonic development. Predicted to be active in basement membrane.

Ensembl:

ensembl_id ENSDART00000142190

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00031734 lncRNA downstream 51457 884106 ~ 898791 (-) True XLOC_016060
TCONS_00033756 lncRNA downstream 220018 728660 ~ 730230 (-) True XLOC_016057
TCONS_00033343 lncRNA downstream 335392 552481 ~ 614856 (-) False XLOC_016051
TCONS_00033342 lncRNA downstream 335392 552481 ~ 614856 (-) False XLOC_016051
TCONS_00033755 lncRNA downstream 335444 565097 ~ 614804 (-) True XLOC_016051
TCONS_00033758 lncRNA upstream 162527 1118752 ~ 1121302 (-) True XLOC_016063
TCONS_00033344 lncRNA upstream 358941 1315166 ~ 1331542 (-) True XLOC_016067
TCONS_00033345 lncRNA upstream 449286 1405511 ~ 1406153 (-) True XLOC_016069
TCONS_00033346 lncRNA upstream 543682 1499907 ~ 1514014 (-) True XLOC_016073
TCONS_00033347 lncRNA upstream 689334 1645559 ~ 1647983 (-) True XLOC_016076
TCONS_00031732 mRNA downstream 51349 881954 ~ 898899 (-) False XLOC_016060
TCONS_00031731 mRNA downstream 70448 854444 ~ 879800 (-) True XLOC_016059
TCONS_00031730 mRNA downstream 217384 731491 ~ 732864 (-) True XLOC_016058
TCONS_00031729 mRNA downstream 228078 720781 ~ 722170 (-) True XLOC_016056
TCONS_00031728 mRNA downstream 233822 713080 ~ 716426 (-) True XLOC_016055
TCONS_00031737 mRNA upstream 218553 1174778 ~ 1188707 (-) True XLOC_016064
TCONS_00031738 mRNA upstream 262533 1218758 ~ 1227221 (-) True XLOC_016065
TCONS_00031739 mRNA upstream 308746 1264971 ~ 1279387 (-) True XLOC_016066
TCONS_00031741 mRNA upstream 392056 1348281 ~ 1364678 (-) False XLOC_016068
TCONS_00031740 mRNA upstream 392056 1348281 ~ 1364678 (-) True XLOC_016068
TCONS_00031733 other downstream 52329 882336 ~ 897919 (-) False XLOC_016060
TCONS_00031725 other downstream 366681 583451 ~ 583567 (-) True XLOC_016052
TCONS_00031757 other upstream 1345133 2301358 ~ 2301434 (-) True XLOC_016081
TCONS_00031768 other upstream 2169733 3125958 ~ 3126074 (-) True XLOC_016090
TCONS_00031770 other upstream 2431347 3387572 ~ 3403034 (-) False XLOC_016091
TCONS_00031782 other upstream 3157893 4114118 ~ 4114216 (-) False XLOC_016100
TCONS_00031783 other upstream 3160089 4116314 ~ 4116400 (-) True XLOC_016100

Expression Profile

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