RNA id: TCONS_00031739


Basic Information

Item Value
RNA id TCONS_00031739
length 3720
RNA type mRNA
GC content 0.50
exon number 5
gene id XLOC_016066
representative True

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 1264971 ~ 1279387 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

tctggctccatagtgtatgctttaaaaaaatTGGCCGGATGCTGGACGAGGAAGGTTTTGGCAGAAGATGATCCATCCTGCTCCTGGCCTGCCTCCTCTCCATCTAGTAAAGACCACACATCTCCAGGCCACGTCGATGACTATGAATACGGTGAAGATGAAGGTGGAGCCGGCCTTCCATACCCATGCCAGTTTTGTGCAAAATCCTTCAGTCGCCTGAGTTTCCTAAAGTGCCACGAGCAGAGTCACCGAGATAAACTTCCCTTCAGCTGCACATACTGCAGTCGCCTGTTCAAGCACAAGCGCAGCCGCGACCGACACATAAAACTCCACACCGGCGACAAAAAGTACCACTGTGGAGACTGCGATTCTGCTTTCTCACGCAGCGATCATCTAAAGATCCATATGAAAACGCACTCCGCAAACAAGCCCCATAAATGCCCGGTGTGCCGCAGGGGGTTCTTGTCCACCAATTCACTCCACGGACACATGCAAGTGCACGAACGTGGGAAGGATGCGGCGAATACAAGATCCCCTCAAGAATGGAGGTTAAAAGAGACACGCAAATGCAGCCGCTGCGAAGAAGGCTTCGATATGCCCGAGGAGTTGCAGAAACACATTGCAGAAAGCCATCCAGAATGCTCTTCTCCTGTACTAGGGAGTCTAGAACCTGGTCTGCAATGCATTTACTGTCACGAGCCATTTAGCAATGAGGGAATGCTCCTAAGCCACATTGATCAGGTGCATGGGAGGGATAGGAAGAGTCACGTGTGTACCGTGTGCTCCGAGCACTTTACCACGGTAGAGAAGCTGTACGCTCACATGGATATTCACCAACTCCCAGAGTCCAGCAATAGCCCTTCTGTGTTGCCCATAGGgtatacttctgtgtcgagcACTACTCCAGACTCTAATCTTTCTGTTGACAGTTCGACTATGGCGGAGACGGCTTCTATAGTGCCCAAGACACGTGGGAGAAGAAAGAGGGCCGCCCATAACGACATGTATAGGCGATCTGCCAAACAGCCGAAAATTGAATATAGCTGCATTTACTGCAGCAAGCAAGTCTTCTCAAGTCTTGGCGTCCTGCAGATTCATCTGAAGACAAAGCACCCTGACAAGCCGGAGCAGGCTCACACCTGCCAATTTTGTCTGGAGATACTTCCATCTCTTTGCAATTTAAACGAACACCTGAAACAGATCCACAACGCAGAGGATCCCTCTGGAGTACTTGCTAATTTGTCTGAAGGTCTGCTGCAGTGCAATTTCTGCCCAGAGTTGCTCGGAGATCTCAATGCGCTGCAGGAGCACATTCGGTGCTCGCATGGCTTTCCTAATCCAGTAGCCAAAGAAAGCAATGCGTTCTTTTGCCCCAAGTGCTTTATGGGATTCTTGACTGAGGCCACGCTTGAAGAACACGTCCGGCAGACTCATTGTGACTCTGGAAGCATGCAGTTCGACTCTCCGCTTGCAGTCACTCCGAAAGATCCCGTCGTGGAGATCTACTCCTGCTCGTACTGCACCAACTCCCCCATTTTTAACACCGTCCTGAAGCTTAACAAGCACATTAAGGAGAACCACAAGAACATCCCCCTTGCTCTGAACTACATCAACAATGGAAGAAGGTCCTTACGAGTCCTCAGCCCCTCATCTCCATTATCCGTGGAACAGGGATCTCTGTTCAAACACAATAGCTCTTCTTTATGTTCAAGTGAGTTCATTTGCAACCAATGTGGCGCTAAGTACACCAGCTTAGACCTTTTCCAGACACACCTCAAGACCCATCTTGATGGTGTGGTGCCACAGCTCACATGTCCCCAGTGCAAGAAGGACTTTCCCAACCAAGAGTCTCTGCTGAAGCACGTGGCTGCTCATTTCACCGTAATGTCCACGTATTACATCTGTGAGAGTTGCGACAAACAGTTCACATCCGTGGATGACTTGCAGAATCACCTTCTGGACATGCACACCTTTGTGTTTTTCCGCTGTACCCTCTGCCAGGAGGTGTTCGACTCTAAAGTGTCAACCCAACTCCATCTTGCTGTAAAGCACAGTAATGAGAGGAAGGTGTACCGCTGTACTTCATGCACCTGGGATTTCAAACATGAGGCTGACCTTCAGATGCATGTCAAACATAGTCACCTTGAAAATCAGGGCTGCTCACATCGTTGCATCTTTTGTGGGGAGTCTTTCGGCACAGAAGTTGAGCTGCAGTGTCATATCACTACTCATAGCAAGAAGTATAATTGCCACTTTTGCTGCAAAGCCTTCAATGCGGTTTATCTGCTAGAGCGCCACCTTCGAGATAAGCATTGTGTGTTTGAGGGAAAAGCCCAGAACTGCAGCACCAATGGATCCACGTCAGGTAGTGGGGATTCAGTCGCCAAGGAGGAGGGAGACTTTCAGGGATTTCTGACCAACAGCCATGGAGGAACTGGTGTTGGTGAATCCCACAACAGTCGGGATGGCAGCGAGGAAGACTTTGATAGCTCGGAGGTCATGTATAGCTGTGACATCTGTGGTGCGTCCTATACCATGGAGTCCCTCCTAACCAATCACCAACTTCGTGATCACAACATTCGACCGGGAGAGAGTGCAATTCACAAGAGAAAGGCAGACATGATCAAGGGAAACCACAAATGCAATGTCTGCTCCAGGACCTTCTTTTCCGAGGGAGGACTtcgggagcacatgcaaacgcaCTTAGGGCCTGTCAAACACTACATGTGTCCTATTTGTGGAGAACGCTTTCCTTCATTACTTACTCTAACAGAACACAAGGTCACTCACAGCAAAAGCCTGGATACTGGAAGCTGCCGCATCTGCAAGTTGCCTCTGCAGAGCGAGGAAGACTTCCTTGAGCATTGTCAGATGCATCCGGATTTGCGCAATTCCTTGACTGGTTTCCGTTGCGTGGTCTGCATGCAGACGGTCACCTCAACCCTCGAACTCAAGATCCACGGCACCTTTCACATGCAGAAGACTGGATCTGCAAATCAGCCCACTGCATGCACACCACAACTCCAGAGCAGTCAGAAAGTCGTCAAATGTGCGGCGTGTCTCAAAGAGTTCCACTCTAAGCACGACTTGGTGAAACTCGACATTAACGGTTTGACATACGGCCTGTGCGCGCTGTGTGTCACTGCTGTCGGTAACAAGAACTCAAGTCTAAATGGAGGGAAGCAGTTGCATCAAGGGGCTCAAACGTCAATGGGTCTTGCATTTGGATGGCCCCAAGGGGAGAGCCTTAGCCCTGGTCCTATGAAAAAAAAGACTGGTTCTTCttcatcatcgtcgtcatcagCATCACCCTCGATTTCTAAGACCCGCTGTTCCAGCTGCAATGTTAAATTTGAGTCGGAGGCGGAGCTTCAAGCTCACCTGCAGACGGTGCACAGAGACCAAACACCTGAGGCAGCCCAGTTAAGGACTCCTGAAGGCTCCCCTATGTCCCGTGTTAGCCCCACACAAAGTGATGAGaAGAAGACATACCAGTGCATCAAGTGTCAGATGGTCTTCTACAGTAAATGGGAAATTCAGGTGCACGTGGCCAATCATATGCTAGGTAAGACTaatgggcggcacggtggcccagtgactagcacttttgcctcacagcaagaataccaatgccATCTGGTCCTTGCTGGGTATCTGATATCCcattgttgtagttttacaaacagACTAGATGATATTGTGAGGAACAATACCCAGTAA

Function

GO:

id name namespace
GO:0046872 metal ion binding molecular_function
GO:0003676 nucleic acid binding molecular_function

KEGG:

id description
ko03000 Transcription factors

ZFIN:

id description
ZDB-GENE-141210-10 Predicted to enable metal ion binding activity. Orthologous to human ZNF521 (zinc finger protein 521).

Ensembl:

ensembl_id ENSDART00000192210

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00033757 lncRNA downstream 69059 931068 ~ 1195912 (-) True XLOC_016061
TCONS_00033758 lncRNA downstream 143669 1118752 ~ 1121302 (-) True XLOC_016063
TCONS_00031734 lncRNA downstream 366180 884106 ~ 898791 (-) True XLOC_016060
TCONS_00033756 lncRNA downstream 534741 728660 ~ 730230 (-) True XLOC_016057
TCONS_00033342 lncRNA downstream 650115 552481 ~ 614856 (-) False XLOC_016051
TCONS_00033344 lncRNA upstream 35779 1315166 ~ 1331542 (-) True XLOC_016067
TCONS_00033345 lncRNA upstream 126124 1405511 ~ 1406153 (-) True XLOC_016069
TCONS_00033346 lncRNA upstream 220520 1499907 ~ 1514014 (-) True XLOC_016073
TCONS_00033347 lncRNA upstream 366172 1645559 ~ 1647983 (-) True XLOC_016076
TCONS_00031754 lncRNA upstream 891984 2171371 ~ 2172639 (-) True XLOC_016079
TCONS_00031738 mRNA downstream 37750 1218758 ~ 1227221 (-) True XLOC_016065
TCONS_00031737 mRNA downstream 76264 1174778 ~ 1188707 (-) True XLOC_016064
TCONS_00031735 mRNA downstream 279554 944341 ~ 985417 (-) False XLOC_016062
TCONS_00031732 mRNA downstream 366072 881954 ~ 898899 (-) False XLOC_016060
TCONS_00031731 mRNA downstream 385171 854444 ~ 879800 (-) True XLOC_016059
TCONS_00031741 mRNA upstream 68894 1348281 ~ 1364678 (-) False XLOC_016068
TCONS_00031740 mRNA upstream 68894 1348281 ~ 1364678 (-) True XLOC_016068
TCONS_00031742 mRNA upstream 149309 1428696 ~ 1443692 (-) True XLOC_016070
TCONS_00031743 mRNA upstream 173647 1453034 ~ 1468258 (-) True XLOC_016071
TCONS_00031744 mRNA upstream 190683 1470070 ~ 1486023 (-) True XLOC_016072
TCONS_00031736 other downstream 308746 950248 ~ 956225 (-) True XLOC_016062
TCONS_00031733 other downstream 367052 882336 ~ 897919 (-) False XLOC_016060
TCONS_00031725 other downstream 681404 583451 ~ 583567 (-) True XLOC_016052
TCONS_00031757 other upstream 1021971 2301358 ~ 2301434 (-) True XLOC_016081
TCONS_00031768 other upstream 1846571 3125958 ~ 3126074 (-) True XLOC_016090
TCONS_00031770 other upstream 2108185 3387572 ~ 3403034 (-) False XLOC_016091
TCONS_00031782 other upstream 2834731 4114118 ~ 4114216 (-) False XLOC_016100
TCONS_00031783 other upstream 2836927 4116314 ~ 4116400 (-) True XLOC_016100

Expression Profile

//

Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000098_02053731_02059911.mRNA True 4342 mRNA 0.46 4 CI01000098 2053402 ~ 2059911 (-)