RNA id: TCONS_00031746


Basic Information

Item Value
RNA id TCONS_00031746
length 2270
RNA type mRNA
GC content 0.45
exon number 12
gene id XLOC_016073
representative False

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 1478225 ~ 1518360 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TACTGTATTATCTAGTCTGTAATGGTTTGCCTTGATGTTAACTTACAATGCACAGCTTTCTAAGAGTGAATTCAGCAATACTTTGCCTGGGCATTTTATGCTCATCATTGAGCAGCGCTGACCCGGCACCTAAAGACCCAGTGGACTGTTCACTGTCTGAGTGGTCTTCATGGACTCGCTGTGATGCCTGTCTGAAAAAAAGGTTCCGCTATGCCACGCTGATCCAGCCGTCTGAGTTTGGAGGAGAACCGTGTCAAAATAATGGTCGAGAGGAGGAATCATGTACGCCTCCAGCTCGATTCTCCTGCCAGAAGTCCTTTGCTATCTGCCAGGGCTTCCGCTGCACGGTCACAGGCCGCTGTGTGCTGGAGAATCTGCGCTGTAATGGAGATGATGACTGTGGAGACGGATCTGATGAGCAGGACTGTAAGAAAGTCTACAAAGCTTGTAATCAGCCCACCGAGGAGTATTACGGCATCGAGAATCTTGCTAAaggATTCAACATTTTGAATGGTAAAATGGAAGCAGTGGTGCTTGATAACCGATATTACGCTGGCGGCTGCCTGCCTCATTTTATCCAAGATGTTCGCTTCAGGAAGCCGTTTAATTTACAACAGTACACAATAGAGACAAAGGGCTCGTATGATTTCAACATGAAGGAGTACGATTCCTACAGCGAATACTTCAAGAGTGAAAGTCATTCAACTCTGTCCAAAACCAGCGTCTCGATTGGGATTGCTTACCCCAATGCCTTTGACTTCAGCTTTGCCTATAATGACCACAAATACAAGCGATCGGTCAAAAAGATGCGCACATATTCGGGGACGAAAAACAAGTTCATCCGTGCTCACTCTGAGCTTGAGGTCGCTCGCTACGCTTTAAAACCACAAAACCTGATGCTACACCCTGAGTTTGTGTCCCGACTGAACGCGCTGCCGCTGGAGTACTCATACGGAGAATACCGGCAGATCTACCAAGACTACGGCACACATTTCATCAAGGAGGCAACTCTGGGTGGAGAATTTGAGTACACCGTTATCCTCAACGACGAGAAGTTCGAGAAATCTGGCTACTCACTTGATGAAACCAAGAATTGTGTGCAGGTTGGGCTTAAGGTTGGAGTCCAGGTTAAAAAGATCTATGTGGGACTTGGACTTTCAGGTGGAAGCTGTGAAGGCCTGCTGAAAGAGATCGGAGATTCCACAAAGGAGAGGGATATGGTGGAAGATGTGTTTATTGTGGTCAAAGGGGGCGACAGTGAGACCGTCTCTCGTCTGGCGGCGAAACAGCTGCCGACTCCAGACATCATGCAGATGTGGGGAGAAGCCGTCTTCTACAATCCTGAGTTTATAAGCAAGAAGATCGAACCGATTTATGAGCTGGTGCCACCTCGAGAGGCAAACGCAAACATCCTAAAGAAAAACCTGAAGAGAGCTCTGTCAGAGTATCTGAGTGAAAGCAGCGCCTGCAGATGTTCACCGTGTCTTAATAATGGCCTGGCAGTGCTCAAGGGCATGAGATGTACTTGTATTTGTCCAGCGGGTGTCAAAGGAGTGAGTTGTGAGATAACTCAAAGAAAAGGTTTGGCAATAGATGGAAACTGGAGCTGCTGGTCTTCATGGTCGAGCTGCTCAGGAAAGATCCAACATCGCACCCGTCAGTGTAATAATCCAGCCCCACACAACGGTGGAGTAGCATGTGCTGGAGCTCAGGAGGAGTCCGCGGATTGTGTCTAAAGTGTGTTATTTACTGGGTAGAAACTGATTGCATCGTGTCctaatgcagttgaagtcagaattattagcccttctgtatgCTTTTTTCCCCATATCACATTTTTGaacttaataactaataataactgatttctcttcaccatgatgacagcacatatttgaCTTGTAGACACTAGCATTCAgctttaaaggcttcactagggtaaatagggtaaagttagggtaattaggcaagtcattgtataacagtggtttgttctggagacaatccaaaactaatattgcttaagggggctaataatattgaccttaaaatgagtttaaaaaatgatgttgttggtttgcactgaatcGCAGTTTCTGAATTTCATTTTCAAAACATCtactagttattttattttcaagatggGGTGATCTATTTGCTGCTGCTTTtggtagtatggcaataaatgttaaatgtatgtataaataaacgtaaaatgtgtttaaactcACATTAGGAGCATTTAACACCgaataaagcccataatcagt

Function

GO:

id name namespace
GO:0006955 immune response biological_process
GO:0006956 complement activation biological_process
GO:0005579 membrane attack complex cellular_component

KEGG:

id description
ko04610 Complement and coagulation cascades
ko05171 Coronavirus disease - COVID-19
ko05146 Amoebiasis
ko05322 Systemic lupus erythematosus
ko05020 Prion disease

ZFIN:

id description
ZDB-GENE-070912-163 Predicted to act upstream of or within complement activation, classical pathway; cytolysis; and innate immune response. Predicted to be located in extracellular region. Predicted to be part of membrane attack complex. Is expressed in liver. Human ortholog(s) of this gene implicated in type II complement component 8 deficiency. Orthologous to human C8B (complement C8 beta chain).

Ensembl:

ensembl_id ENSDART00000057736

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00033345 lncRNA downstream 93673 1405511 ~ 1406153 (-) True XLOC_016069
TCONS_00033344 lncRNA downstream 168284 1315166 ~ 1331542 (-) True XLOC_016067
TCONS_00033757 lncRNA downstream 303914 931068 ~ 1195912 (-) True XLOC_016061
TCONS_00033758 lncRNA downstream 378524 1118752 ~ 1121302 (-) True XLOC_016063
TCONS_00031734 lncRNA downstream 601035 884106 ~ 898791 (-) True XLOC_016060
TCONS_00033347 lncRNA upstream 131558 1645559 ~ 1647983 (-) True XLOC_016076
TCONS_00031754 lncRNA upstream 657370 2171371 ~ 2172639 (-) True XLOC_016079
TCONS_00033759 lncRNA upstream 971434 2485435 ~ 2494300 (-) True XLOC_016082
TCONS_00033760 lncRNA upstream 1880949 3394950 ~ 3403020 (-) False XLOC_016091
TCONS_00033761 lncRNA upstream 1880949 3394950 ~ 3403034 (-) False XLOC_016091
TCONS_00031744 mRNA downstream 13803 1470070 ~ 1486023 (-) True XLOC_016072
TCONS_00031743 mRNA downstream 31568 1453034 ~ 1468258 (-) True XLOC_016071
TCONS_00031742 mRNA downstream 56134 1428696 ~ 1443692 (-) True XLOC_016070
TCONS_00031741 mRNA downstream 135148 1348281 ~ 1364678 (-) False XLOC_016068
TCONS_00031740 mRNA downstream 135148 1348281 ~ 1364678 (-) True XLOC_016068
TCONS_00031747 mRNA upstream 8720 1522721 ~ 1548330 (-) False XLOC_016074
TCONS_00031748 mRNA upstream 9172 1523173 ~ 1569250 (-) False XLOC_016074
TCONS_00031750 mRNA upstream 13383 1527384 ~ 1548372 (-) False XLOC_016074
TCONS_00031749 mRNA upstream 13383 1527384 ~ 1548372 (-) True XLOC_016074
TCONS_00031751 mRNA upstream 80343 1594344 ~ 1622641 (-) True XLOC_016075
TCONS_00031736 other downstream 543601 950248 ~ 956225 (-) True XLOC_016062
TCONS_00031733 other downstream 601907 882336 ~ 897919 (-) False XLOC_016060
TCONS_00031725 other downstream 916259 583451 ~ 583567 (-) True XLOC_016052
TCONS_00031757 other upstream 787357 2301358 ~ 2301434 (-) True XLOC_016081
TCONS_00031768 other upstream 1611957 3125958 ~ 3126074 (-) True XLOC_016090
TCONS_00031770 other upstream 1873571 3387572 ~ 3403034 (-) False XLOC_016091
TCONS_00031782 other upstream 2600117 4114118 ~ 4114216 (-) False XLOC_016100
TCONS_00031783 other upstream 2602313 4116314 ~ 4116400 (-) True XLOC_016100

Expression Profile

//

Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000098_02473023_02489273.mRNA True 1730 mRNA 0.43 10 CI01000098 2472938 ~ 2489273 (-)