RNA id: TCONS_00033346


Basic Information

Item Value
RNA id TCONS_00033346
length 590
lncRNA type sense_over
GC content 0.35
exon number 2
gene id XLOC_016073
representative True

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 1478225 ~ 1518360 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GTTTAAGGTCTAATACTGTATTATCTAGTCTGTAATGGTTTGCCTTGATGTTAACTTACAATGCACAGCTTTCTAAGAGTGAATTCAGCAATACTTTGCCTGGGCATTTTATGGAGGAGTCCGCGGATTGTGTCTAAAGTGTGTTATTTACTGGGTAGAAACTGATTGCATCGTGTCctaatgcagttgaagtcagaattattagcccttctgtatgCTTTTTTCCCCATATCACATTTTTGaacttaataactaataataactgatttctcttcaccatgatgacagcacatatttgaCTTGTAGACACTAGCATTCAgctttaaaggcttcactagggtaaatagggtaaagttagggtaattaggcaagtcattgtataacagtggtttgttctggagacaatccaaaactaatattgcttaagggggctaataatattgaccttaaaatgagtttaaaaaatgatgttgttggtttgcactgaatcGCAGTTTCTGAATTTCATTTTCAAAACATCtactagttattttattttcaagatggGGTGATCTATTTGCTGCTGCTTTtggtagtatggcaataaatgt

Function

GO:

id name namespace
GO:0006955 immune response biological_process
GO:0006956 complement activation biological_process
GO:0005579 membrane attack complex cellular_component

KEGG:

id description
ko04610 Complement and coagulation cascades
ko05171 Coronavirus disease - COVID-19
ko05146 Amoebiasis
ko05322 Systemic lupus erythematosus
ko05020 Prion disease

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00033345 lncRNA downstream 93754 1405511 ~ 1406153 (-) True XLOC_016069
TCONS_00033344 lncRNA downstream 168365 1315166 ~ 1331542 (-) True XLOC_016067
TCONS_00033757 lncRNA downstream 303995 931068 ~ 1195912 (-) True XLOC_016061
TCONS_00033758 lncRNA downstream 378605 1118752 ~ 1121302 (-) True XLOC_016063
TCONS_00031734 lncRNA downstream 601116 884106 ~ 898791 (-) True XLOC_016060
TCONS_00033347 lncRNA upstream 131545 1645559 ~ 1647983 (-) True XLOC_016076
TCONS_00031754 lncRNA upstream 657357 2171371 ~ 2172639 (-) True XLOC_016079
TCONS_00033759 lncRNA upstream 971421 2485435 ~ 2494300 (-) True XLOC_016082
TCONS_00033760 lncRNA upstream 1880936 3394950 ~ 3403020 (-) False XLOC_016091
TCONS_00033761 lncRNA upstream 1880936 3394950 ~ 3403034 (-) False XLOC_016091
TCONS_00031744 mRNA downstream 13884 1470070 ~ 1486023 (-) True XLOC_016072
TCONS_00031743 mRNA downstream 31649 1453034 ~ 1468258 (-) True XLOC_016071
TCONS_00031742 mRNA downstream 56215 1428696 ~ 1443692 (-) True XLOC_016070
TCONS_00031741 mRNA downstream 135229 1348281 ~ 1364678 (-) False XLOC_016068
TCONS_00031740 mRNA downstream 135229 1348281 ~ 1364678 (-) True XLOC_016068
TCONS_00031747 mRNA upstream 8707 1522721 ~ 1548330 (-) False XLOC_016074
TCONS_00031748 mRNA upstream 9159 1523173 ~ 1569250 (-) False XLOC_016074
TCONS_00031750 mRNA upstream 13370 1527384 ~ 1548372 (-) False XLOC_016074
TCONS_00031749 mRNA upstream 13370 1527384 ~ 1548372 (-) True XLOC_016074
TCONS_00031751 mRNA upstream 80330 1594344 ~ 1622641 (-) True XLOC_016075
TCONS_00031736 other downstream 543682 950248 ~ 956225 (-) True XLOC_016062
TCONS_00031733 other downstream 601988 882336 ~ 897919 (-) False XLOC_016060
TCONS_00031725 other downstream 916340 583451 ~ 583567 (-) True XLOC_016052
TCONS_00031757 other upstream 787344 2301358 ~ 2301434 (-) True XLOC_016081
TCONS_00031768 other upstream 1611944 3125958 ~ 3126074 (-) True XLOC_016090
TCONS_00031770 other upstream 1873558 3387572 ~ 3403034 (-) False XLOC_016091
TCONS_00031782 other upstream 2600104 4114118 ~ 4114216 (-) False XLOC_016100
TCONS_00031783 other upstream 2602300 4116314 ~ 4116400 (-) True XLOC_016100

Expression Profile

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