RNA id: TCONS_00031748


Basic Information

Item Value
RNA id TCONS_00031748
length 1941
RNA type mRNA
GC content 0.51
exon number 14
gene id XLOC_016074
representative False

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 1522721 ~ 1569250 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ctctCCAGCGTCGAGAAGCGGAAACTGAGCAACTTCACATGCTGCCTCTTGATATTTGACTTTCGCATGTAGCCTATATGTACATGCAGGAATGGATTTAACTCATAATCCGAGCACTAGAGCTGCTGGACATTGATAATGGTTGGAAATAAATGGATGTATATCGGAAGTGACCGCGACGAGCGTTTCAGAAGAGAATAATGTGAATTTCAGAGGATCAGCTGTGAAAAAGCAAGCAGAAGAAACAGGGGTTCTCACCATCTGGAGTTGTGTGTGTGATACTGGATTTAATGTCAGATGACAGGGACAGTATGGCAGCACATTGAAATATCCTCAAGACGACTAGAAGACACTTTAGGAGAAGCAGCTCCATGATACGGAGAGGAGCAAAAACACGGGAGGATGTCAACAGAGGCTGAACCTCAAGCAGAACTTAAAGTCACCGTCAAGAAGGAGTCCAGGAGAAGAGGTCAGGATCGCAGTGAACAGGCGCTGATTCAGCGCTACAGAGGTGACGGGATCCGTTATAAGGCTAAACTAATTGGGATTGATGATGTGACGGCGACGCGAGGAGACAAACTGTGCCAGGACTCCATGATGAAGCTGAAGGGAATCGCTGCCTCTGCGCGCTCAAAAGGGAAACACAAGCAGAGGATTTTCCTGACCGTGTCTTTTGGTGGAATCAAGATTTATGATGAGCGATCAGGGGTCTTACAGCATCATCACTCTGTTCATGAAATCTCCTACATTGCCAAAGACTCACGAGACCATCGCGCCTTCGGCTATGTGTGCGGGAAAAAAGGCAACCACAAATTTGTGGCAATCAAAACCAGCCATGCAGCAGCGCCAGTTATACTGGATCTGCGAGACCTTTTCACCCTCATTCATGATATAAAACAAAGGGAAGAAGCAGAAAAAAAGAGCCAGAAGGAAAAACACTGTGAACAAGTCATCTATCAGACTATTCTGGAAGATGAGGTTGATGATCCGGTGTATCAGTACATTGTGTTTGAAGCCGGACACGAGCCCCTGCATGGCCACCAATCAGAGGAGAGCGTTTACCAGGTCCCCACAAGTCAGCAGAAAGACGGGATCTATGACGTTCCAAAACACCATCTAATGGCTAATATTAGCCAGGTGGATCTTTTTGGAGACATGGCCACCCCGCCAGACATCCTTTCTATGCCCGCATCACCGGCCACCACACTGGATCCCGGAAGGAGACGACGATTTGTCCGACCTGAACTCTTCACCCATTTTAGTCCACCCGCTGTCCCCACAGGTTATATGACCATGGGTGCCCTCCAGGCGGCTCACTGGACGCCCCAGGCCACTCCGATGGCGTTCGGGGTTCAGACACCGCTCCACATGGCCCAGATGCTCCCCGGAGGACAGCCTGTGATTTGGGGCCAGGCCAACCTCTTCCACTCCCCAGCCACGGGTCAGCAGCAGTGGGCGTTCGTCCCAGCGCAGGCTGTTGGTTTGGGGACGCACCCCATTTCAGCCGCGGTGCTCCAGGGTCTGATCCCCCTCGCCAGCATGCGCCCTCAGTCCTGTGAACCTCCGGAGACGTCCTCAAACTTTATGAGCCCTCAGCATTTAGTAGACTCAAGGGGATCTGAGCATGCCATAAACACAGACCCTCATGAGGAAGTAATAACTGCGGAGATTTGCATAAACAAACAGGACACTATTGAGCCCTCGGTGGACTCCTGCGAGGAGCTGGATCTTTCACAGATGACACTGCAGACTACAGAGCCGTCGACATCAGCGTCCGCTACTGATTCTTGTGCGACTCCTGATCCGGAGAAGCAAACCACCGCAGATGCCACTTCAGTAGAGGAATTACAGGACAGCTCAGTCAGTGTGCCAGAAGTTTTGGAGAAAGCAGCAGATGCTCAGATAAATCCTCCAGACTCTTCCCAGCAGGATGCCTAAAGA

Function

GO:

id name namespace
GO:0097477 lateral motor column neuron migration biological_process
GO:0021517 ventral spinal cord development biological_process
GO:0005737 cytoplasm cellular_component
GO:0003674 molecular_function molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-060421-7958 Predicted to be involved in lateral motor column neuron migration and ventral spinal cord development. Predicted to be active in cytoplasm. Is expressed in several structures, including blood; digestive system; immature eye; nervous system; and otic vesicle. Human ortholog(s) of this gene implicated in spinocerebellar ataxia type 37. Orthologous to human DAB1 (DAB adaptor protein 1).

Ensembl:

ensembl_id ENSDART00000167202

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00033346 lncRNA downstream 9159 1499907 ~ 1514014 (-) True XLOC_016073
TCONS_00033345 lncRNA downstream 117020 1405511 ~ 1406153 (-) True XLOC_016069
TCONS_00033344 lncRNA downstream 191631 1315166 ~ 1331542 (-) True XLOC_016067
TCONS_00033757 lncRNA downstream 327261 931068 ~ 1195912 (-) True XLOC_016061
TCONS_00033347 lncRNA upstream 76309 1645559 ~ 1647983 (-) True XLOC_016076
TCONS_00031754 lncRNA upstream 602121 2171371 ~ 2172639 (-) True XLOC_016079
TCONS_00033759 lncRNA upstream 916185 2485435 ~ 2494300 (-) True XLOC_016082
TCONS_00033760 lncRNA upstream 1825700 3394950 ~ 3403020 (-) False XLOC_016091
TCONS_00033761 lncRNA upstream 1825700 3394950 ~ 3403034 (-) False XLOC_016091
TCONS_00031745 mRNA downstream 4813 1478225 ~ 1518360 (-) False XLOC_016073
TCONS_00031746 mRNA downstream 9172 1499826 ~ 1514001 (-) False XLOC_016073
TCONS_00031744 mRNA downstream 37150 1470070 ~ 1486023 (-) True XLOC_016072
TCONS_00031743 mRNA downstream 54915 1453034 ~ 1468258 (-) True XLOC_016071
TCONS_00031742 mRNA downstream 79481 1428696 ~ 1443692 (-) True XLOC_016070
TCONS_00031751 mRNA upstream 25094 1594344 ~ 1622641 (-) True XLOC_016075
TCONS_00031752 mRNA upstream 441027 2010277 ~ 2020044 (-) True XLOC_016077
TCONS_00031753 mRNA upstream 455360 2024610 ~ 2096055 (-) True XLOC_016078
TCONS_00031755 mRNA upstream 720898 2290148 ~ 2380872 (-) False XLOC_016080
TCONS_00031756 mRNA upstream 720901 2290151 ~ 2451181 (-) True XLOC_016080
TCONS_00031736 other downstream 566948 950248 ~ 956225 (-) True XLOC_016062
TCONS_00031733 other downstream 625254 882336 ~ 897919 (-) False XLOC_016060
TCONS_00031725 other downstream 939606 583451 ~ 583567 (-) True XLOC_016052
TCONS_00031757 other upstream 732108 2301358 ~ 2301434 (-) True XLOC_016081
TCONS_00031768 other upstream 1556708 3125958 ~ 3126074 (-) True XLOC_016090
TCONS_00031770 other upstream 1818322 3387572 ~ 3403034 (-) False XLOC_016091
TCONS_00031782 other upstream 2544868 4114118 ~ 4114216 (-) False XLOC_016100
TCONS_00031783 other upstream 2547064 4116314 ~ 4116400 (-) True XLOC_016100

Expression Profile

//