RNA id: TCONS_00031761


Basic Information

Item Value
RNA id TCONS_00031761
length 499
RNA type mRNA
GC content 0.49
exon number 4
gene id XLOC_016086
representative False

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 2927463 ~ 2957970 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CGTATTATTCCGAGTCCTCCATCCAGCAGAAGCTCCTGGGCCTTTTGAATAATGTGGCGGAGGTGGAGGATCTGCGGCCGGAGCTGATGAACGAGGAGCTGCTGGAGCACATTCTCCAGCTGCTGGTCCTGCCGCTGGTGGAGGTGGATGTCAGCTACTTTGCTGGAGGGATTTTGGCTCATCTGGTGTCCGTCAGGGGGCCCGTGTGGAGTCTGGATGAGGAGCTGCGCTGCACAGTACAGGaccaactgCACTCGTCTATCCTGTCATGGAGTTCCCCTCAGCATGTGATGGTGTCTTACCGTGAAGGCCGTCCGCTGAGGAAGTATAAAAACAGTGGATCCTACATGCTGAAGGGATTCATCAGCCAGAAACCTTTCATAACTCTTCACAGCACATTTATCTGCTggtacatttgtttttttctggctaaactaatagaaataatgtgttttcagtttgttattaaaatgtgGATTTTGTGAACttgtaaaaaaaa

Function

GO:

id name namespace
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0031462 Cul2-RING ubiquitin ligase complex cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-5941 Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be part of Cul2-RING ubiquitin ligase complex. Orthologous to human ZYG11A (zyg-11 family member A, cell cycle regulator) and ZYG11B (zyg-11 family member B, cell cycle regulator).

Ensembl:

ensembl_id ENSDART00000168132

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00033759 lncRNA downstream 433163 2485435 ~ 2494300 (-) True XLOC_016082
TCONS_00031754 lncRNA downstream 754824 2171371 ~ 2172639 (-) True XLOC_016079
TCONS_00033347 lncRNA downstream 1279480 1645559 ~ 1647983 (-) True XLOC_016076
TCONS_00033346 lncRNA downstream 1413449 1499907 ~ 1514014 (-) True XLOC_016073
TCONS_00033345 lncRNA downstream 1521310 1405511 ~ 1406153 (-) True XLOC_016069
TCONS_00033760 lncRNA upstream 457725 3394950 ~ 3403020 (-) False XLOC_016091
TCONS_00033761 lncRNA upstream 457725 3394950 ~ 3403034 (-) False XLOC_016091
TCONS_00031772 lncRNA upstream 474851 3412076 ~ 3416207 (-) True XLOC_016092
TCONS_00033762 lncRNA upstream 582358 3519583 ~ 3520166 (-) True XLOC_016095
TCONS_00033348 lncRNA upstream 1176786 4114011 ~ 4118815 (-) False XLOC_016100
TCONS_00031760 mRNA downstream 114204 2790573 ~ 2813259 (-) True XLOC_016085
TCONS_00031759 mRNA downstream 284987 2630188 ~ 2642476 (-) True XLOC_016084
TCONS_00031758 mRNA downstream 303480 2621400 ~ 2623983 (-) True XLOC_016083
TCONS_00031756 mRNA downstream 476282 2290151 ~ 2451181 (-) True XLOC_016080
TCONS_00031755 mRNA downstream 546591 2290148 ~ 2380872 (-) False XLOC_016080
TCONS_00031763 mRNA upstream 89577 3026802 ~ 3038904 (-) False XLOC_016087
TCONS_00031764 mRNA upstream 89577 3026802 ~ 3044947 (-) False XLOC_016087
TCONS_00031765 mRNA upstream 89577 3026802 ~ 3045863 (-) True XLOC_016087
TCONS_00031766 mRNA upstream 125512 3062737 ~ 3077027 (-) True XLOC_016088
TCONS_00031767 mRNA upstream 169012 3106237 ~ 3158919 (-) True XLOC_016089
TCONS_00031757 other downstream 626029 2301358 ~ 2301434 (-) True XLOC_016081
TCONS_00031736 other downstream 1971238 950248 ~ 956225 (-) True XLOC_016062
TCONS_00031733 other downstream 2029544 882336 ~ 897919 (-) False XLOC_016060
TCONS_00031725 other downstream 2343896 583451 ~ 583567 (-) True XLOC_016052
TCONS_00031768 other upstream 188733 3125958 ~ 3126074 (-) True XLOC_016090
TCONS_00031770 other upstream 450347 3387572 ~ 3403034 (-) False XLOC_016091
TCONS_00031782 other upstream 1176893 4114118 ~ 4114216 (-) False XLOC_016100
TCONS_00031783 other upstream 1179089 4116314 ~ 4116400 (-) True XLOC_016100
TCONS_00031786 other upstream 1633788 4571013 ~ 4571103 (-) True XLOC_016102

Expression Profile

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