RNA id: TCONS_00031770


Basic Information

Item Value
RNA id TCONS_00031770
length 960
RNA type processed_transcript
GC content 0.44
exon number 4
gene id XLOC_016091
representative False

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 3387390 ~ 3403793 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AAACATTCACCCTTTGCTTGGGCTGTTTACATCGCTATAACACAGCAGCGAACTATAATCTGATATTTGCTGATATTTCTTCTGATTTGGCGTTTTAATTAGATGTAGCAGGAAACACTAAAGTAGTGCAGCAAATGTCTCGCATCCGAGAACAATTTGCCTCGCTGCAAACATATCAAATCAACTCAACTTTACAATGTGAAGGGATATTGTTTATCCCAATGCGTACTTTACGTCACACCTTGCTGTAGCTGCCACTTTCAATTCTGAAGACATCCTAAAAGGTCATGGCCAGGACACAGAGGTGCCAGTGGAGGTGCCTGCTGGAGAACTGACGCAACTGCAGCTTCAGGTGCTTCAGCCCACTGTTACTGAGGCGGAGGCGCAGGAGCTAAAACAGATGCTCCAGCAGCTGAAGAATCTGGCTCTGGAGGCTGAGACGGAACTGGAGCGTCAGGACGAGGCTCTGGACGTGTTGAGCTGCTCTACTGACCACGCCACCATGAACATTAACAGACACACTCGCCGCATGAGGAAACTGCTGTGAACCCAACGTCAACAGATTAATGGTCAACATACGGTAAATCTGCGACCTACAACCTAAATCTGCTCATTTTGCATGGCCTGGCATCCTCACATCATCGTAATAAAAGAGTGATCGATGGCACAATTTGAATACTGTAATCAATTTGTAGTTGTTATGTGACATCTCAGTAACAAGATTCTGTACATTGTCAAACCCTTAACAGTAATCctacggtggctgagagagctcaaatgtgctgcaagttaataaaacatacaaatgcAATTTGACAACACACATCCTTCCgcattctcacaacacatgcaaatacagaaacacactgcaaatagcacagacggTAACGTAAATTTGTCTGGGGACGCCAATAAGTGACGAagcagagtttttttttgtttattttaacatcctgatct

Function

GO:

id name namespace
GO:0006887 exocytosis biological_process
GO:0016082 synaptic vesicle priming biological_process
GO:0006906 vesicle fusion biological_process
GO:0031629 synaptic vesicle fusion to presynaptic active zone membrane biological_process
GO:0005886 plasma membrane cellular_component
GO:0031083 BLOC-1 complex cellular_component
GO:0031201 SNARE complex cellular_component
GO:0005484 SNAP receptor activity molecular_function
GO:0019905 syntaxin binding molecular_function

KEGG:

id description
ko04131 Membrane trafficking

ZFIN:

id description
ZDB-GENE-060825-140 Predicted to enable SNAP receptor activity and syntaxin binding activity. Predicted to be involved in synaptic vesicle fusion to presynaptic active zone membrane and synaptic vesicle priming. Predicted to be part of SNARE complex. Predicted to be active in plasma membrane. Orthologous to human SNAP47 (synaptosome associated protein 47).

Ensembl:

ensembl_id ENSDART00000141363

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00033759 lncRNA downstream 893272 2485435 ~ 2494300 (-) True XLOC_016082
TCONS_00031754 lncRNA downstream 1214933 2171371 ~ 2172639 (-) True XLOC_016079
TCONS_00033347 lncRNA downstream 1739589 1645559 ~ 1647983 (-) True XLOC_016076
TCONS_00033346 lncRNA downstream 1873558 1499907 ~ 1514014 (-) True XLOC_016073
TCONS_00033345 lncRNA downstream 1981419 1405511 ~ 1406153 (-) True XLOC_016069
TCONS_00031772 lncRNA upstream 9042 3412076 ~ 3416207 (-) True XLOC_016092
TCONS_00033762 lncRNA upstream 116549 3519583 ~ 3520166 (-) True XLOC_016095
TCONS_00033348 lncRNA upstream 710977 4114011 ~ 4118815 (-) False XLOC_016100
TCONS_00031790 lncRNA upstream 1376066 4779100 ~ 4797512 (-) True XLOC_016104
TCONS_00031791 lncRNA upstream 1409660 4812694 ~ 4814272 (-) True XLOC_016105
TCONS_00031767 mRNA downstream 228653 3106237 ~ 3158919 (-) True XLOC_016089
TCONS_00031766 mRNA downstream 310545 3062737 ~ 3077027 (-) True XLOC_016088
TCONS_00031765 mRNA downstream 341709 3026802 ~ 3045863 (-) True XLOC_016087
TCONS_00031764 mRNA downstream 342625 3026802 ~ 3044947 (-) False XLOC_016087
TCONS_00031763 mRNA downstream 348668 3026802 ~ 3038904 (-) False XLOC_016087
TCONS_00031773 mRNA upstream 13649 3416683 ~ 3419890 (-) True XLOC_016093
TCONS_00031774 mRNA upstream 32854 3435888 ~ 3437862 (-) True XLOC_016094
TCONS_00031775 mRNA upstream 200555 3603589 ~ 3616363 (-) False XLOC_016096
TCONS_00031776 mRNA upstream 200678 3603712 ~ 3611960 (-) False XLOC_016096
TCONS_00031777 mRNA upstream 200724 3603758 ~ 3614005 (-) True XLOC_016096
TCONS_00031768 other downstream 261498 3125958 ~ 3126074 (-) True XLOC_016090
TCONS_00031757 other downstream 1086138 2301358 ~ 2301434 (-) True XLOC_016081
TCONS_00031736 other downstream 2431347 950248 ~ 956225 (-) True XLOC_016062
TCONS_00031733 other downstream 2489653 882336 ~ 897919 (-) False XLOC_016060
TCONS_00031725 other downstream 2804005 583451 ~ 583567 (-) True XLOC_016052
TCONS_00031782 other upstream 711084 4114118 ~ 4114216 (-) False XLOC_016100
TCONS_00031783 other upstream 713280 4116314 ~ 4116400 (-) True XLOC_016100
TCONS_00031786 other upstream 1167979 4571013 ~ 4571103 (-) True XLOC_016102
TCONS_00031796 other upstream 1500526 4903560 ~ 5014629 (-) False XLOC_016107
TCONS_00031798 other upstream 1504762 4907796 ~ 4925127 (-) False XLOC_016107

Expression Profile

//