RNA id: TCONS_00033761


Basic Information

Item Value
RNA id TCONS_00033761
length 400
lncRNA type sense_over
GC content 0.45
exon number 2
gene id XLOC_016091
representative False

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 3387390 ~ 3403793 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AAACATTCACCCTTTGCTTGGGCTGTTTACATCGCTATAACACAGCAGCGAACTATAATCTGATATTTGCTGATATTTCTTCTGATTTGGCGTTTTAATTAGATGTAGCAGGAAACACTAAAGTAGTGCAGCAAATGTCTCGCATCCGAGAACAATTTGCCTCGCTGCAAACATATCAAATCAACTCAACTTTACAATGTGAAGGGATATTGTTTATCCCAATGCGTACTTTACGTCACACCTTGCTGTAGCTGCCACTTTCAATTCTGAAGACATCCTAAAAGGTCATGGCCAGGACACAGAGGTGCCAGTGGAGGTGCCTGCTGGAGAACTGACGCAACTGCAGCTTCAGGTGCTTCAGCCCACTGTTACTGAGGCGGAGGCGCAGGAGCTAAAACAG

Function

GO:

id name namespace
GO:0006887 exocytosis biological_process
GO:0016082 synaptic vesicle priming biological_process
GO:0006906 vesicle fusion biological_process
GO:0031629 synaptic vesicle fusion to presynaptic active zone membrane biological_process
GO:0005886 plasma membrane cellular_component
GO:0031083 BLOC-1 complex cellular_component
GO:0031201 SNARE complex cellular_component
GO:0005484 SNAP receptor activity molecular_function
GO:0019905 syntaxin binding molecular_function

KEGG:

id description
ko04131 Membrane trafficking

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00033759 lncRNA downstream 900650 2485435 ~ 2494300 (-) True XLOC_016082
TCONS_00031754 lncRNA downstream 1222311 2171371 ~ 2172639 (-) True XLOC_016079
TCONS_00033347 lncRNA downstream 1746967 1645559 ~ 1647983 (-) True XLOC_016076
TCONS_00033346 lncRNA downstream 1880936 1499907 ~ 1514014 (-) True XLOC_016073
TCONS_00033345 lncRNA downstream 1988797 1405511 ~ 1406153 (-) True XLOC_016069
TCONS_00031772 lncRNA upstream 9042 3412076 ~ 3416207 (-) True XLOC_016092
TCONS_00033762 lncRNA upstream 116549 3519583 ~ 3520166 (-) True XLOC_016095
TCONS_00033348 lncRNA upstream 710977 4114011 ~ 4118815 (-) False XLOC_016100
TCONS_00031790 lncRNA upstream 1376066 4779100 ~ 4797512 (-) True XLOC_016104
TCONS_00031791 lncRNA upstream 1409660 4812694 ~ 4814272 (-) True XLOC_016105
TCONS_00031767 mRNA downstream 236031 3106237 ~ 3158919 (-) True XLOC_016089
TCONS_00031766 mRNA downstream 317923 3062737 ~ 3077027 (-) True XLOC_016088
TCONS_00031765 mRNA downstream 349087 3026802 ~ 3045863 (-) True XLOC_016087
TCONS_00031764 mRNA downstream 350003 3026802 ~ 3044947 (-) False XLOC_016087
TCONS_00031763 mRNA downstream 356046 3026802 ~ 3038904 (-) False XLOC_016087
TCONS_00031773 mRNA upstream 13649 3416683 ~ 3419890 (-) True XLOC_016093
TCONS_00031774 mRNA upstream 32854 3435888 ~ 3437862 (-) True XLOC_016094
TCONS_00031775 mRNA upstream 200555 3603589 ~ 3616363 (-) False XLOC_016096
TCONS_00031776 mRNA upstream 200678 3603712 ~ 3611960 (-) False XLOC_016096
TCONS_00031777 mRNA upstream 200724 3603758 ~ 3614005 (-) True XLOC_016096
TCONS_00031768 other downstream 268876 3125958 ~ 3126074 (-) True XLOC_016090
TCONS_00031757 other downstream 1093516 2301358 ~ 2301434 (-) True XLOC_016081
TCONS_00031736 other downstream 2438725 950248 ~ 956225 (-) True XLOC_016062
TCONS_00031733 other downstream 2497031 882336 ~ 897919 (-) False XLOC_016060
TCONS_00031725 other downstream 2811383 583451 ~ 583567 (-) True XLOC_016052
TCONS_00031782 other upstream 711084 4114118 ~ 4114216 (-) False XLOC_016100
TCONS_00031783 other upstream 713280 4116314 ~ 4116400 (-) True XLOC_016100
TCONS_00031786 other upstream 1167979 4571013 ~ 4571103 (-) True XLOC_016102
TCONS_00031796 other upstream 1500526 4903560 ~ 5014629 (-) False XLOC_016107
TCONS_00031798 other upstream 1504762 4907796 ~ 4925127 (-) False XLOC_016107

Expression Profile

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